RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CIPCQ9C0C6 399 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PRSS16Q9NQE7 514 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ABCB8Q9NUT2 735 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 HOOK1Q9UJC3 728 aaKnown RBP12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GGA2Q9UJY4 613 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SLCO1B1Q9Y6L6 691 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TMEM131Q92545 1883 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TMEM8BA6NDV4 472 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 H0Y626 953 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 HYAL3O43820 417 aaPredicted RBP12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SH3BP5O60239 455 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 FBXO21O94952 628 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TRIM16O95361 564 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 DLDP09622 509 aaKnown RBP12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CD70P32970 193 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 STIM1Q13586 685 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ARID5BQ14865 1188 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 DCAF12L1Q5VU92 463 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NUGGCQ68CJ6 796 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MBLAC2Q68D91 279 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 RFWD3Q6PCD5 774 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 RRAGAQ7L523 313 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GLRX5Q86SX6 157 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SCUBE3Q8IX30 993 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 AHI1Q8N157 1196 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NELFBQ8WX92 580 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CAMK1GQ96NX5 476 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ORAI3Q9BRQ5 295 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SLC4A5Q9BY07 1137 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 FBRSQ9HAH7 460 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 OSGEPQ9NPF4 335 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 KLK13Q9UKR3 277 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 INTS6Q9UL03 887 aaKnown RBP12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZMIZ1Q9ULJ6 1067 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PLA2G4CQ9UP65 541 aa12.74□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GOLGA4Q13439 2230 aaKnown RBP12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 M0QYV0 167 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PIK3R2O00459 728 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 BCAT2O15382 392 aaPredicted RBP12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 IGLV3-25P01717 112 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ACSL1P33121 698 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TBX4P57082 545 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 RPS14P62263 151 aaKnown RBP12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZBTB16Q05516 673 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TRIP6Q15654 476 aaKnown RBP12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CCDC40Q4G0X9 1142 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TMEM110Q86TL2 294 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZCCHC9Q8N567 271 aaKnown RBP12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZNF366Q8N895 744 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 KDM1BQ8NB78 822 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 BAHD1Q8TBE0 780 aaPredicted RBP12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 DQX1Q8TE96 717 aaKnown RBP12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 STK32AQ8WU08 396 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MRGPRX3Q96LB0 322 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PRICKLE1Q96MT3 831 aaPredicted RBP12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 C6orf106Q9H6K1 298 aaPredicted RBP12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SUN2Q9UH99 717 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 EIF2B4Q9UI10 523 aaKnown RBP12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CYTH4Q9UIA0 394 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TLR6Q9Y2C9 796 aa12.73□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ACACAQ13085 2346 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ARID1BQ8NFD5 2236 aaPredicted RBP12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 BICDL2A1A5D9 508 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TBL1XO60907 577 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GADD45BO75293 160 aaPredicted RBP12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 DKK1O94907 266 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GNA14O95837 355 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ATP5BP06576 529 aaKnown RBP12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ACADMP11310 421 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SLC11A2P49281 568 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CETN1Q12798 172 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZNF423Q2M1K9 1284 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MS4A13Q5J8X5 152 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SYPL2Q5VXT5 272 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 KLHL10Q6JEL2 608 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZNF557Q8N988 423 aaPredicted RBP12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZNF606Q8WXB4 792 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ADAMTS14Q8WXS8 1223 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MED15Q96RN5 788 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 RSPH9Q9H1X1 276 aaPredicted RBP12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 LHX5Q9H2C1 402 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 IL21RQ9HBE5 538 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PCOLCE2Q9UKZ9 415 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NAALADL1Q9UQQ1 740 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CELSR3Q9NYQ7 3312 aa12.72□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 DOCK9Q9BZ29 2069 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NBEAQ8NFP9 2946 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MEI4A8MW99 385 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PAPSS1O43252 624 aaPredicted RBP12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 POLR2EP19388 210 aaKnown RBP12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ACADSBP45954 432 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 RPS24P62847 133 aaKnown RBP12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 HLA-BQ31612 363 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 FNDC3BQ53EP0 1204 aaKnown RBP12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 FSCBQ5H9T9 825 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SMYD5Q6GMV2 418 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 DENND1BQ6P3S1 775 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 IL27RAQ6UWB1 636 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SLCO6A1Q86UG4 719 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms