RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 DMRTA2Q96SC8 542 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 MAK16Q9BXY0 300 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 EDEM3Q9BZQ6 932 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 IQCGQ9H095 443 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 TMEM60Q9H2L4 133 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 ACAD9Q9H845 621 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 TRPV5Q9NQA5 729 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 MCM9Q9NXL9 1143 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 QPCTLQ9NXS2 382 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 SEPT10Q9P0V9 454 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 CALCOCO1Q9P1Z2 691 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 VPS28Q9UK41 221 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 HPCAL4Q9UM19 191 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 LRRC14BA6NHZ5 514 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 LACTBL1A8MY62 500 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 AP3B1O00203 1094 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 ADAMTS3O15072 1205 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 IRAK2O43187 625 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 TUSC2O75896 110 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 ANXA1P04083 346 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 GJB1P08034 283 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 CLTBP09497 229 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 CCDC172P0C7W6 258 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 SRGAP2BP0DMP2 458 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 PCP11498 1178 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 SCG2P13521 617 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 ZFXP17010 805 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 MALP21145 153 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 DRD4P21917 467 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 PDIA3P30101 505 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 HOXD13P35453 343 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 TECP42680 631 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 CASP5P51878 434 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 TFF2Q03403 129 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 ZBTB16Q05516 673 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 KLHL30Q0D2K2 578 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 SLC10A2Q12908 348 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 SNAPC2Q13487 334 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 KCNB1Q14721 858 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 TTC39AQ5SRH9 613 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 MEX3CQ5U5Q3 659 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 ZNF626Q68DY1 528 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 ZNF425Q6IV72 752 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 TAF2Q6P1X5 1199 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 PGBD2Q6P3X8 592 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 UNC45BQ8IWX7 931 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 KIAA0319LQ8IZA0 1049 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 LRRC43Q8N309 656 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 DCLK2Q8N568 766 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 MOSPD2Q8NHP6 518 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 PPP1R35Q8TAP8 253 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 RFFLQ8WZ73 363 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 HPS3Q969F9 1004 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 COA7Q96BR5 231 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 LTV1Q96GA3 475 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 TMEM41AQ96HV5 264 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 CCDC114Q96M63 670 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 C7orf26Q96N11 449 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 ALG8Q9BVK2 526 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 SIL1Q9H173 461 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 MAGEH1Q9H213 219 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 LIN28AQ9H9Z2 209 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 TCP11L1Q9NUJ3 509 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 PSD3Q9NYI0 1048 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 CHORDC1Q9UHD1 332 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 SERPINB13Q9UIV8 391 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 RASAL2Q9UJF2 1139 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 MRPL11Q9Y3B7 192 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 PAXBP1Q9Y5B6 917 aa5.19□□□□□ -1.58
CCDC88A-210ENST00000468534 RSF1Q96T23 1441 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 PI4KAP2A4QPH2 592 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 KIF2AO00139 706 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 CACNB4O00305 520 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 KRT38O76015 456 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 RPLP2P05387 115 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 PRR35P0CG20 571 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 TSPY4P0CV99 314 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 TSPY10P0CW01 314 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 PEX2P28328 305 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 TKTL1P51854 596 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 PPARDQ03181 441 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 TFCP2Q12800 502 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 TBCCQ15814 346 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 KRBOX4Q5JUW0 171 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 FAM209BQ5JX69 171 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 SPDYCQ5MJ68 293 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 RBM20Q5T481 1227 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 HAUS3Q68CZ6 603 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 WDR73Q6P4I2 378 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 IL27RAQ6UWB1 636 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 PLEKHM3Q6ZWE6 761 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 CCDC186Q7Z3E2 898 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 TMEM110Q86TL2 294 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 SPC24Q8NBT2 197 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 CCDC148Q8NFR7 591 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 SEMA6DQ8NFY4 1073 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 SUN5Q8TC36 379 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 ADAMTS15Q8TE58 950 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 SHC3Q92529 594 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms