RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MKS1Q9NXB0 559 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 NOP53Q9NZM5 478 aaKnown RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 SIRPGQ9P1W8 387 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 ARMCX1Q9P291 453 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 MARCOQ9UEW3 520 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 STAP1Q9ULZ2 295 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 C15orf41Q9Y2V0 281 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 PSAT1Q9Y617 370 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 BRCA2P51587 3418 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 MYBPHLA2RUH7 354 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 CAPN9O14815 690 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 DNAJC6O75061 913 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 CELF2O95319 508 aaKnown RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 FAM200BP0CF97 657 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 CHRM1P11229 460 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 MLNP12872 115 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 MLH1P40692 756 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 SERPINB9P50453 376 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 NIPAL4Q0D2K0 466 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 PDK1Q15118 436 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 TEX44Q53QW1 395 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 C16orf46Q6P387 395 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 TLDC1Q6P9B6 456 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 CYS1Q717R9 158 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 PID1Q7Z2X4 250 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 ARID3BQ8IVW6 561 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 HACE1Q8IYU2 909 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 APBB2Q92870 758 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 LPPQ93052 612 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 AGAP3Q96P47 875 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 TSPAN18Q96SJ8 248 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 GAD1Q99259 594 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 SMOQ99835 787 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 CADM1Q9BY67 442 aaKnown RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 NMUR2Q9GZQ4 415 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 AP5M1Q9H0R1 490 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 DENND2DQ9H6A0 471 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 FCHO1O14526 889 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 DCLK1O15075 740 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 PEX11AO75192 247 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 USP12O75317 370 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 ENTPD5O75356 428 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 WFS1O76024 890 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 STK10O94804 968 aaKnown RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 ALDOAP04075 364 aaKnown RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 BPGMP07738 259 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 USP17L7P0C7H9 530 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 ADRA1BP35368 520 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 CLCNKBP51801 687 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 OCRLQ01968 901 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 CRYMQ14894 314 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 PAFAH1B3Q15102 231 aaKnown RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 ATG16L1Q676U5 607 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 RFWD3Q6PCD5 774 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 PACS1Q6VY07 963 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 TIFABQ6ZNK6 161 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 PAXIP1Q6ZW49 1069 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 MARK2Q7KZI7 788 aaKnown RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 C2orf69Q8N8R5 385 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 C3orf58Q8NDZ4 430 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 ZMIZ2Q8NF64 920 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 TTC8Q8TAM2 541 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 KCNV2Q8TDN2 545 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 PCED1BQ96HM7 432 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 NSL1Q96IY1 281 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 C7orf26Q96N11 449 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 TLE6Q9H808 572 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 WDR6Q9NNW5 1121 aaKnown RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 MIOSQ9NXC5 875 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 TPP1O14773 563 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 PPP1R12AO14974 1030 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 CCDC22O60826 627 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 AP1G2O75843 785 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 GSRP00390 522 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 ERVK-10P10266 1014 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 NCAM1P13591 858 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 ERCC2P18074 760 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 PGAM1P18669 254 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 GMPRP36959 345 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 DAOAP59103 153 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 IFRD2Q12894 506 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 FSCN1Q16658 493 aaKnown RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 RINLQ6ZS11 566 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 TRIM42Q8IWZ5 723 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 GIMAP7Q8NHV1 300 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 MYCBPQ99417 103 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 BTBD10Q9BSF8 475 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 RHOBTB2Q9BYZ6 727 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 XPNPEP3Q9NQH7 507 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 EIF2B3Q9NR50 452 aaKnown RBP9.19□□□□□ -0.94
SYNE1-217ENST00000466159 SHROOM3Q8TF72 1996 aa9.19□□□□□ -0.94
SYNE1-217ENST00000466159 MYADML2A6NDP7 307 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 F7P08709 466 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 PURAQ00577 322 aaKnown RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 PDE1CQ14123 709 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 FAM35AQ86V20 835 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 NPWQ8N729 165 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 OR52K1Q8NGK4 314 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 EDEM1Q92611 657 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 CDKL2Q92772 493 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms