RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 MSLNLQ96KJ4 702 aa11.37□□□□□ -0.59
SCN9A-205ENST00000454569 CDX2Q99626 313 aaPredicted RBP11.37□□□□□ -0.59
SCN9A-205ENST00000454569 PRMT1Q99873 361 aaKnown RBP11.37□□□□□ -0.59
SCN9A-205ENST00000454569 CARD6Q9BX69 1037 aa11.37□□□□□ -0.59
SCN9A-205ENST00000454569 AP1M1Q9BXS5 423 aa11.37□□□□□ -0.59
SCN9A-205ENST00000454569 CALN1Q9BXU9 219 aa11.37□□□□□ -0.59
SCN9A-205ENST00000454569 OSBPL8Q9BZF1 889 aa11.37□□□□□ -0.59
SCN9A-205ENST00000454569 ADAM7Q9H2U9 754 aa11.37□□□□□ -0.59
SCN9A-205ENST00000454569 TASP1Q9H6P5 420 aa11.37□□□□□ -0.59
SCN9A-205ENST00000454569 DZANK1Q9NVP4 752 aa11.37□□□□□ -0.59
SCN9A-205ENST00000454569 OR12D3Q9UGF7 316 aa11.37□□□□□ -0.59
SCN9A-205ENST00000454569 DPP7Q9UHL4 492 aa11.37□□□□□ -0.59
SCN9A-205ENST00000454569 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.37□□□□□ -0.59
SCN9A-205ENST00000454569 MRPS23Q9Y3D9 190 aaKnown RBP11.37□□□□□ -0.59
SCN9A-205ENST00000454569 HBS1LQ9Y450 684 aaKnown RBP11.37□□□□□ -0.59
SCN9A-205ENST00000454569 LRIG2O94898 1065 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 MAP3K6O95382 1288 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 CKMP06732 381 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 CORO1AP31146 461 aaKnown RBP11.36□□□□□ -0.59
SCN9A-205ENST00000454569 SGSHP51688 502 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 MLLT6P55198 1093 aaPredicted RBP11.36□□□□□ -0.59
SCN9A-205ENST00000454569 DYNLT1P63172 113 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 SLC7A9P82251 487 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 MRPS25P82663 173 aaKnown RBP11.36□□□□□ -0.59
SCN9A-205ENST00000454569 RING1Q06587 406 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 KLF1Q13351 362 aaPredicted RBP11.36□□□□□ -0.59
SCN9A-205ENST00000454569 NNTQ13423 1086 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 KRT81Q14533 505 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 FAM133BQ5BKY9 247 aaKnown RBP11.36□□□□□ -0.59
SCN9A-205ENST00000454569 ANKRD20A8PQ5CZ79 823 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 MANEALQ5VSG8 457 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 RAP1GAP2Q684P5 730 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 RFWD3Q6PCD5 774 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 NUDT18Q6ZVK8 323 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 NPAS3Q8IXF0 933 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 CCDC33Q8N5R6 958 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 ACTRT1Q8TDG2 376 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 IGSF8Q969P0 613 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 HAUS1Q96CS2 278 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 FAF2Q96CS3 445 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 CSPG4P5Q96PW8 444 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 RNF157Q96PX1 679 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 OSBPL2Q9H1P3 480 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 NDFIP2Q9NV92 336 aa11.36□□□□□ -0.59
SCN9A-205ENST00000454569 AGO1Q9UL18 857 aaKnown RBP11.36□□□□□ -0.59
SCN9A-205ENST00000454569 TRAV19A0A0A6YYK7 116 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 H3BQ06 376 aaPredicted RBP11.35□□□□□ -0.59
SCN9A-205ENST00000454569 LEFTY2O00292 366 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 CES2O00748 559 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 CNTN5O94779 1100 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 SRGAP2BP0DMP2 458 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 CD46P15529 392 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 PECAM1P16284 738 aaPredicted RBP11.35□□□□□ -0.59
SCN9A-205ENST00000454569 DESP17661 470 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 FSHRP23945 695 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 VIPR2P41587 438 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 COG7P83436 770 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 C2orf54Q08AI8 447 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 SLC10A2Q12908 348 aaPredicted RBP11.35□□□□□ -0.59
SCN9A-205ENST00000454569 AUHQ13825 339 aaKnown RBP11.35□□□□□ -0.59
SCN9A-205ENST00000454569 PDK2Q15119 407 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 LONRF2Q1L5Z9 754 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 TFDP3Q5H9I0 405 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 EFHC2Q5JST6 749 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 HABP4Q5JVS0 413 aaKnown RBP11.35□□□□□ -0.59
SCN9A-205ENST00000454569 SEL1L2Q5TEA6 688 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 Q6ZNB5 142 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 CIR1Q86X95 450 aaPredicted RBP11.35□□□□□ -0.59
SCN9A-205ENST00000454569 ARID3BQ8IVW6 561 aaPredicted RBP11.35□□□□□ -0.59
SCN9A-205ENST00000454569 PLD5Q8N7P1 536 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 PPM1EQ8WY54 764 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 ATG4AQ8WYN0 398 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 FGF13Q92913 245 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 RBM41Q96IZ5 413 aaKnown RBP11.35□□□□□ -0.59
SCN9A-205ENST00000454569 GCNAQ96QF7 691 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 HAPLN3Q96S86 360 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 MYADMQ96S97 322 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 CDK5RAP1Q96SZ6 601 aaKnown RBP11.35□□□□□ -0.59
SCN9A-205ENST00000454569 NCAPGQ9BPX3 1015 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 SLITRK6Q9H5Y7 841 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 C10orf88Q9H8K7 445 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 MPP6Q9NZW5 540 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 CFAP97Q9P2B7 532 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 VANGL2Q9ULK5 521 aa11.35□□□□□ -0.59
SCN9A-205ENST00000454569 TTC7AQ9ULT0 858 aaPredicted RBP11.35□□□□□ -0.59
SCN9A-205ENST00000454569 CLUHO75153 1309 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 E9PAM4 449 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 ACSL4O60488 711 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 TSPAN3O60637 253 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 CST8O60676 142 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 VCPP55072 806 aaKnown RBP11.34□□□□□ -0.59
SCN9A-205ENST00000454569 DPYSQ14117 519 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 ARL13BQ3SXY8 428 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 ALFQ53S48 1182 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 FBXL22Q6P050 247 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 GET4Q7L5D6 327 aaPredicted RBP11.34□□□□□ -0.59
SCN9A-205ENST00000454569 TADA2BQ86TJ2 420 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 RFX6Q8HWS3 928 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 PSTKQ8IV42 348 aaKnown RBP11.34□□□□□ -0.59
SCN9A-205ENST00000454569 BBS7Q8IWZ6 715 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms