RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 DYRK1AQ13627 763 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 EIF4A2Q14240 407 aaKnown RBP4.52□□□□□ -1.69
HMGB3-203ENST00000430118 GRM4Q14833 912 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 ACOX1Q15067 660 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 BTBD16Q32M84 506 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 ATG16L1Q676U5 607 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 ACAD10Q6JQN1 1059 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 MICALCLQ6ZW33 695 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 LRRC8DQ7L1W4 858 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 POLNQ7Z5Q5 900 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 SYT12Q8IV01 421 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 SYNE4Q8N205 404 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 Q8NA96 180 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 OR56A1Q8NGH5 318 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 ZNF483Q8TF39 744 aaPredicted RBP4.52□□□□□ -1.69
HMGB3-203ENST00000430118 RSPRY1Q96DX4 576 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 VN1R3Q9BXE9 311 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 NYXQ9GZU5 481 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 VPS33BQ9H267 617 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 EPS8L2Q9H6S3 715 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 PLEKHA5Q9HAU0 1116 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 KCNK9Q9NPC2 374 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 FSCN3Q9NQT6 498 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 LIN7CQ9NUP9 197 aaKnown RBP4.52□□□□□ -1.69
HMGB3-203ENST00000430118 RNF186Q9NXI6 227 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 HSFX1Q9UBD0 423 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 SH3BP1Q9Y3L3 701 aa4.52□□□□□ -1.69
HMGB3-203ENST00000430118 SCN11AQ9UI33 1791 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 KRTAP4-8A0A0G2JLE6 195 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 MYADML2A6NDP7 307 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 FAM90A20PA6NIJ5 464 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 TOR1BO14657 336 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 TRIM24O15164 1050 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 PPIP5K2O43314 1243 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 HNRNPRO43390 633 aaKnown RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 LAMTOR5O43504 91 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 PPP6R2O75170 966 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 RPP40O75818 363 aaKnown RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 GPANK1O95872 356 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 CSF1RP07333 972 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 ZSCAN22P10073 491 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 TNNT1P13805 278 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 RXRAP19793 462 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 CHRM3P20309 590 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 CD6P30203 668 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 HTR7P34969 479 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 EPS15P42566 896 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 DGKQP52824 942 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 RABGGTBP53611 331 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 ATXN1P54253 815 aaKnown RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 CASP6P55212 293 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 TIRAPP58753 221 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 NHLH2Q02577 135 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 HHEXQ03014 270 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 SREBF2Q12772 1141 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 SF3A3Q12874 501 aaKnown RBP eCLIP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 TNIP1Q15025 636 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 ST3GAL2Q16842 350 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 ARHGAP40Q5TG30 622 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 TCERG1LQ5VWI1 586 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 TSHZ3Q63HK5 1081 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 RGS7BPQ6MZT1 257 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 SLC30A10Q6XR72 485 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 TAX1BP1Q86VP1 789 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 RAB11FIP4Q86YS3 637 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 ARMC8Q8IUR7 673 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 SP8Q8IXZ3 490 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 ELOA2Q8IYF1 753 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 TMTC2Q8N394 836 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 D2HGDHQ8N465 521 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 SLC2A12Q8TD20 617 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 SNX19Q92543 992 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 ANP32BQ92688 251 aaKnown RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 DCPSQ96C86 337 aaKnown RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 KTI12Q96EK9 354 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 RRP36Q96EU6 259 aaKnown RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 LRIG1Q96JA1 1093 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 TIGD1Q96MW7 591 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 LRRC37BQ96QE4 947 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 GLIS2Q9BZE0 524 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 PAIP1Q9H074 479 aaKnown RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 BRD8Q9H0E9 1235 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 GBA2Q9HCG7 927 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 ORC3Q9UBD5 711 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 STEAP1Q9UHE8 339 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 BAG5Q9UL15 447 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 DNAJC16Q9Y2G8 782 aa4.51□□□□□ -1.69
HMGB3-203ENST00000430118 UBE2J1Q9Y385 318 aaPredicted RBP4.51□□□□□ -1.69
HMGB3-203ENST00000430118 AKAP11Q9UKA4 1901 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 GAGE12BA1L429 117 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 DYTNA2CJ06 578 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 VWA3AA6NCI4 1184 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 GAGE12HA6NDE8 117 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 PGPEP1LA6NFU8 196 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 MBD3L5A6NJ08 208 aaPredicted RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 A8MVJ9 347 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 TCERG1O14776 1098 aaKnown RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 KIAA0355O15063 1070 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 ZNF500O60304 480 aaPredicted RBP4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms