RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 MAGED2Q9UNF1 606 aaPredicted RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 DFFAO00273 331 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 NDUFAB1O14561 156 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 POLBP06746 335 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 CCNCP24863 283 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 NFKBIAP25963 317 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 NDUFV1P49821 464 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 KPNA2P52292 529 aaKnown RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 NDST2P52849 883 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 YBEYP58557 167 aaPredicted RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 RING1Q06587 406 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 RASA2Q15283 850 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 UAP1Q16222 522 aaPredicted RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 TAC4Q86UU9 113 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 PRCCQ92733 491 aaPredicted RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 USP13Q92995 863 aaPredicted RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 IL23AQ9NPF7 189 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 PFKLP17858 780 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 MAPKAPK2P49137 400 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 TUBP50607 506 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 MMRN1Q13201 1228 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 TMED2Q15363 201 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 MTFR1Q15390 333 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 UGP2Q16851 508 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 ANKRD20A2Q5SQ80 823 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 ANKRD20A1Q5TYW2 823 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 ANKRD20A3Q5VUR7 823 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 DAB2IPQ5VWQ8 1189 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 SCARA3Q6AZY7 606 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 ANKS1BQ7Z6G8 1248 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 METTL3Q86U44 580 aaKnown RBP8.63□□□□□ -1.03
USP54-203ENST00000418501 CCDC185Q8N715 623 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 COLGALT1Q8NBJ5 622 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 OR10T2Q8NGX3 314 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 STAMBPL1Q96FJ0 436 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 SCLYQ96I15 445 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 ZNF333Q96JL9 665 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 FAM118BQ9BPY3 351 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 FSD1LQ9BXM9 530 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 SEMA4AQ9H3S1 761 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 A0A1W2PQH9 124 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 RNF103O00237 685 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 SYF2O95926 243 aaKnown RBP8.63□□□□□ -1.03
USP54-203ENST00000418501 MDH1P40925 334 aaKnown RBP8.63□□□□□ -1.03
USP54-203ENST00000418501 C3orf62Q6ZUJ4 267 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 PAQR9Q6ZVX9 377 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 DDX53Q86TM3 631 aaKnown RBP8.63□□□□□ -1.03
USP54-203ENST00000418501 TDRPQ86YL5 185 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 CPNE8Q86YQ8 564 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 PLCD3Q8N3E9 789 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 ZNF276Q8N554 614 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 C3orf58Q8NDZ4 430 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 CLEC4CQ8WTT0 213 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 DEPDC1BQ8WUY9 529 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 CENPTQ96BT3 561 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 PEBP4Q96S96 227 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 IGSF9Q9P2J2 1179 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 CDY1Q9Y6F8 540 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.63□□□□□ -1.03
USP54-203ENST00000418501 MTMR11A4FU01 709 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 GOLGA8CPA6NN73 597 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 SLC38A8A6NNN8 435 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 RASA4BC9J798 803 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 KIAA0355O15063 1070 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 RASA4O43374 803 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 CYBBP04839 570 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 HADHAP40939 763 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 MMP13P45452 471 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 DNAJC3Q13217 504 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 FYB2Q5VWT5 728 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 NLRP9Q7RTR0 991 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 RTN4RL1Q86UN2 441 aaPredicted RBP8.63□□□□□ -1.03
USP54-203ENST00000418501 HDAC11Q96DB2 347 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 C11orf84Q9BUA3 381 aaPredicted RBP8.63□□□□□ -1.03
USP54-203ENST00000418501 PPANQ9NQ55 473 aaKnown RBP8.63□□□□□ -1.03
USP54-203ENST00000418501 ARHGEF38Q9NXL2 777 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 INSL6Q9Y581 213 aa8.63□□□□□ -1.03
USP54-203ENST00000418501 OR1D2P34982 312 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 FPGSQ05932 587 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 ITKQ08881 620 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 FAAP100Q0VG06 881 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 SPARCL1Q14515 664 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 PARP15Q460N3 678 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 ZNF449Q6P9G9 518 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 NDUFAF2Q8N183 169 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 LEMD2Q8NC56 503 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 PPHLN1Q8NEY8 458 aaKnown RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 GSDMBQ8TAX9 411 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 CFAP36Q96G28 342 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 C9orf72Q96LT7 481 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 LATS1O95835 1130 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 CDC25CP30307 473 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 ZNF177Q13360 481 aaPredicted RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 ZNF235Q14590 738 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 TXNRD3NBQ6F5E7 133 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 FBXO36Q8NEA4 188 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 ZNF461Q8TAF7 563 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 UHMK1Q8TAS1 419 aaKnown RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 GRAMD1AQ96CP6 724 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms