RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 F5H5T6 163 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 ENDOD1O94919 500 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 KLF8O95600 359 aaPredicted RBP13.83□□□□□ -0.2
VPS28-201ENST00000292510 F9P00740 461 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 TPM1P09493 284 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 TDGF1P13385 188 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 HLA-FP30511 346 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 PTPN9P43378 593 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 IRAK1P51617 712 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 OGDHQ02218 1023 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 MAMLD1Q13495 774 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 ARID5BQ14865 1188 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 PREPLQ4J6C6 727 aaPredicted RBP13.83□□□□□ -0.2
VPS28-201ENST00000292510 BRMS1LQ5PSV4 323 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 EGFLAMQ63HQ2 1017 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 PPP1R2P3Q6NXS1 205 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 FBXL22Q6P050 247 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 DCUN1D2Q6PH85 259 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 MAMSTRQ6ZN01 415 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 VPS36Q86VN1 386 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 CARNMT1Q8N4J0 409 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 IL17RCQ8NAC3 791 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 TXNDC5Q8NBS9 432 aaKnown RBP13.83□□□□□ -0.2
VPS28-201ENST00000292510 HJURPQ8NCD3 748 aaPredicted RBP13.83□□□□□ -0.2
VPS28-201ENST00000292510 FAM172AQ8WUF8 416 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 ATOH1Q92858 354 aaPredicted RBP13.83□□□□□ -0.2
VPS28-201ENST00000292510 IGSF8Q969P0 613 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 VCPIP1Q96JH7 1222 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 ISCUQ9H1K1 167 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 ABCB8Q9NUT2 735 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 MYO1AQ9UBC5 1043 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 CNOT8Q9UFF9 292 aaKnown RBP13.83□□□□□ -0.2
VPS28-201ENST00000292510 VANGL2Q9ULK5 521 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 SLC27A6Q9Y2P4 619 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 USP34Q70CQ2 3546 aa13.83□□□□□ -0.2
VPS28-201ENST00000292510 TYW5A2RUC4 315 aaKnown RBP13.82□□□□□ -0.2
VPS28-201ENST00000292510 AKR1B15C9JRZ8 316 aaPredicted RBP13.82□□□□□ -0.2
VPS28-201ENST00000292510 K7ESF4 209 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 SGK1O00141 431 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 CCP110O43303 1012 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 ATG13O75143 517 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 CD70P32970 193 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 WASP42768 502 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 PXNP49023 591 aaPredicted RBP13.82□□□□□ -0.2
VPS28-201ENST00000292510 HDAC4P56524 1084 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 MRPS21P82921 87 aaKnown RBP13.82□□□□□ -0.2
VPS28-201ENST00000292510 GFPT1Q06210 699 aaPredicted RBP13.82□□□□□ -0.2
VPS28-201ENST00000292510 DMWDQ09019 674 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 AUHQ13825 339 aaKnown RBP13.82□□□□□ -0.2
VPS28-201ENST00000292510 MPP7Q5T2T1 576 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 TMEM215Q68D42 235 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 RNF43Q68DV7 783 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 PLEKHA7Q6IQ23 1121 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 ANKS1BQ7Z6G8 1248 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 MFN1Q8IWA4 741 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 ZNF513Q8N8E2 541 aaPredicted RBP13.82□□□□□ -0.2
VPS28-201ENST00000292510 ERLEC1Q96DZ1 483 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 RPRD1AQ96P16 312 aaPredicted RBP13.82□□□□□ -0.2
VPS28-201ENST00000292510 HHIPQ96QV1 700 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 ACOX2Q99424 681 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 CHP1Q99653 195 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 SLC2A11Q9BYW1 496 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 TRIM7Q9C029 511 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 PARVAQ9NVD7 372 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 FBXO4Q9UKT5 387 aa13.82□□□□□ -0.2
VPS28-201ENST00000292510 ANKRD62A6NC57 917 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 ADAM23O75077 832 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 LUC7L3O95232 432 aaKnown RBP13.81□□□□□ -0.2
VPS28-201ENST00000292510 HNRNPLP14866 589 aaKnown RBP eCLIP13.81□□□□□ -0.2
VPS28-201ENST00000292510 NUMBP49757 651 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 ZNF143P52747 638 aaPredicted RBP13.81□□□□□ -0.2
VPS28-201ENST00000292510 NHLH1Q02575 133 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 LMAN2Q12907 356 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 DMC1Q14565 340 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 FSCBQ5H9T9 825 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 CCDC122Q5T0U0 273 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 HEATR6Q6AI08 1181 aaKnown RBP13.81□□□□□ -0.2
VPS28-201ENST00000292510 ALKBH5Q6P6C2 394 aaKnown RBP13.81□□□□□ -0.2
VPS28-201ENST00000292510 NUDT18Q6ZVK8 323 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 SYT13Q7L8C5 426 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 STRADAQ7RTN6 431 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 DRC7Q8IY82 874 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 CCDC185Q8N715 623 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 CCDC26Q8TAB7 109 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 SORCS1Q8WY21 1168 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 CENPIQ92674 756 aaPredicted RBP13.81□□□□□ -0.2
VPS28-201ENST00000292510 ACDQ96AP0 544 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 MRFAP1L1Q96HT8 127 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 PHOX2BQ99453 314 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 MAGEB5Q9BZ81 275 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 IRX2Q9BZI1 471 aaPredicted RBP13.81□□□□□ -0.2
VPS28-201ENST00000292510 THAP2Q9H0W7 228 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 ZNHIT6Q9NWK9 470 aaKnown RBP13.81□□□□□ -0.2
VPS28-201ENST00000292510 GGA2Q9UJY4 613 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 MMP17Q9ULZ9 603 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 NENFQ9UMX5 172 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 SLC8A2Q9UPR5 921 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 STARD13Q9Y3M8 1113 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 PAXBP1Q9Y5B6 917 aa13.81□□□□□ -0.2
VPS28-201ENST00000292510 R4GN57 208 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms