RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 GOLGA8NF8WBI6 632 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 C1QAP02745 245 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 PTPN1P18031 435 aaKnown RBP17.1■□□□□ 0.33
VPS54-201ENST00000272322 MATKP42679 507 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 DCAF4L1Q3SXM0 396 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 ACSBG2Q5FVE4 666 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 SMC1BQ8NDV3 1235 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 ACVR1CQ8NER5 493 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 FRMD8P1Q9BZ68 369 aaPredicted RBP17.1■□□□□ 0.33
VPS54-201ENST00000272322 WASF2Q9Y6W5 498 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 NEMP1O14524 444 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 MDM4O15151 490 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 CCDC22O60826 627 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 ALDOAP04075 364 aaKnown RBP17.1■□□□□ 0.33
VPS54-201ENST00000272322 CCR10P46092 362 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 CLCNKBP51801 687 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 SLC25A3Q00325 362 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 MUM1Q2TAK8 710 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 PLEKHH3Q7Z736 793 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 MS4A4AQ96JQ5 239 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 XPNPEP3Q9NQH7 507 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 TMEM216Q9P0N5 145 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 PGK1P00558 417 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 JCHAINP01591 159 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 SLC18A2Q05940 514 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 CXCL17Q6UXB2 119 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 C10orf107Q8IVU9 208 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 BTBD10Q9BSF8 475 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 EBF2Q9HAK2 575 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 SLC24A3Q9HC58 644 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 SPON1Q9HCB6 807 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 SDR42E2A6NKP2 422 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 CELF2O95319 508 aaKnown RBP17.09■□□□□ 0.33
VPS54-201ENST00000272322 TPBGLP0DKB5 382 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 CALB2P22676 271 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 GSCP56915 257 aaPredicted RBP17.09■□□□□ 0.33
VPS54-201ENST00000272322 PDE1CQ14123 709 aaPredicted RBP17.09■□□□□ 0.33
VPS54-201ENST00000272322 TTC16Q8NEE8 873 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 CHRAC1Q9NRG0 131 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 BPTFQ12830 3046 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 A0A0A0MRY4 1105 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 NDC80O14777 642 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 SCNN1GP51170 649 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 RGS9BPQ6ZS82 235 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 PLD6Q8N2A8 252 aaKnown RBP17.09■□□□□ 0.33
VPS54-201ENST00000272322 RBM15BQ8NDT2 890 aaKnown RBP17.09■□□□□ 0.33
VPS54-201ENST00000272322 STK32AQ8WU08 396 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 SGF29Q96ES7 293 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 SENP8Q96LD8 212 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 SPATA13Q96N96 652 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 FCRL3Q96P31 734 aaPredicted RBP17.09■□□□□ 0.33
VPS54-201ENST00000272322 MIOSQ9NXC5 875 aa17.09■□□□□ 0.33
VPS54-201ENST00000272322 PRRC2BQ5JSZ5 2229 aaKnown RBP17.08■□□□□ 0.33
VPS54-201ENST00000272322 DFFAO00273 331 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 USP1O94782 785 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 CD1EP15812 388 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 MSX2P35548 267 aaPredicted RBP17.08■□□□□ 0.33
VPS54-201ENST00000272322 TPI1P60174 286 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 IRF9Q00978 393 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 CRYMQ14894 314 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 ZBTB6Q15916 424 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 ATG14Q6ZNE5 492 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 CLEC20AQ6ZU45 233 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 ZNF410Q86VK4 478 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 SPATA22Q8NHS9 363 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 STMN2Q93045 179 aa17.08■□□□□ 0.33
VPS54-201ENST00000272322 ZBTB24O43167 697 aaPredicted RBP17.08■□□□□ 0.32
VPS54-201ENST00000272322 PDE5AO76074 875 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 BRCC3P46736 316 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 SDHAF4Q5VUM1 108 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 C4orf50Q6ZRC1 276 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 PAQR9Q6ZVX9 377 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 RAPH1Q70E73 1250 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 OTOP3Q7RTS5 596 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 TEX9Q8N6V9 391 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 NPWQ8N729 165 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 TNIP3Q96KP6 325 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 MTO1Q9Y2Z2 717 aaKnown RBP17.08■□□□□ 0.32
VPS54-201ENST00000272322 PTPRFP10586 1907 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 MYADML2A6NDP7 307 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 NPR3P17342 541 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 BDNFP23560 247 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 SARNPP82979 210 aaKnown RBP17.08■□□□□ 0.32
VPS54-201ENST00000272322 CCDC15Q0P6D6 951 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 PACS1Q6VY07 963 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 STRA8Q7Z7C7 330 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 C3orf58Q8NDZ4 430 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 PCED1BQ96HM7 432 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 PCDHA11Q9Y5I1 949 aa17.08■□□□□ 0.32
VPS54-201ENST00000272322 PIRO00625 290 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 PHGDHO43175 533 aaKnown RBP17.07■□□□□ 0.32
VPS54-201ENST00000272322 ATP5HO75947 161 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 B3GAT3O94766 335 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 DHRS4L1P0CG22 281 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 ZNF460Q14592 562 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 SLC25A52Q3SY17 297 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 BZW1Q7L1Q6 419 aaKnown RBP17.07■□□□□ 0.32
VPS54-201ENST00000272322 SMG8Q8ND04 991 aaKnown RBP17.07■□□□□ 0.32
VPS54-201ENST00000272322 TEKT4Q8WW24 435 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 XAB2Q9HCS7 855 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms