RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 RCCD1A6NED2 376 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 F5H5T6 163 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 CISD3P0C7P0 127 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 CHRNB1P11230 501 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 TCF4P15884 667 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 TMEM31Q5JXX7 168 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 C10orf76Q5T2E6 689 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 CCDC105Q8IYK2 499 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 ZNF683Q8IZ20 524 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 FBXL6Q8N531 539 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 HJURPQ8NCD3 748 aaPredicted RBP13.19□□□□□ -0.3
SS18-202ENST00000269138 WFDC5Q8TCV5 224 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 XPO6Q96QU8 1125 aaKnown RBP13.19□□□□□ -0.3
SS18-202ENST00000269138 HAPLN3Q96S86 360 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 PEBP4Q96S96 227 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 PNKPQ96T60 521 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 LMAN1LQ9HAT1 526 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 TMEM51Q9NW97 253 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 GPATCH2LQ9NWQ4 482 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 DEC1Q9P2X7 70 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 UVRAGQ9P2Y5 699 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 PCSK1NQ9UHG2 260 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 FBXO10Q9UK96 956 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 INTUQ9ULD6 942 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 MRPS17Q9Y2R5 130 aaKnown RBP13.19□□□□□ -0.3
SS18-202ENST00000269138 SIT1Q9Y3P8 196 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 PAXBP1Q9Y5B6 917 aa13.19□□□□□ -0.3
SS18-202ENST00000269138 FAM72CH0Y354 149 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 MYO1FO00160 1098 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 LRCH4O75427 683 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 KAT7O95251 611 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 MIPP30301 263 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 GRSF1Q12849 480 aaKnown RBP eCLIP13.18□□□□□ -0.3
SS18-202ENST00000269138 FAM72AQ5TYM5 149 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 RNF43Q68DV7 783 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 GRAMD4Q6IC98 578 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 FAM72DQ6L9T8 149 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 C1orf228Q6PIY5 440 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 SLFN11Q7Z7L1 901 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 FAM72BQ86X60 149 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 PYROXD2Q8N2H3 581 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 TMEM105Q8N8V8 129 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 C1orf74Q96LT6 269 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 RPRD1AQ96P16 312 aaPredicted RBP13.18□□□□□ -0.3
SS18-202ENST00000269138 NELL2Q99435 816 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 DESI2Q9BSY9 194 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 C1QTNF1Q9BXJ1 281 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 ARHGEF4Q9NR80 690 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 IP6K2Q9UHH9 426 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 FZD10Q9ULW2 581 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 A0A0U1RQJ8 604 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 TMEM110-MUSTN1A8MSY1 372 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 PRR33A8MZF0 331 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 K7EQS6 105 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 SRGAP2O75044 1071 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 RNF8O76064 485 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 CNTN5O94779 1100 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 AOC1P19801 751 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 IL1R2P27930 398 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 EIF2DP41214 584 aaKnown RBP13.18□□□□□ -0.3
SS18-202ENST00000269138 DGKGP49619 791 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 CLCN5P51795 746 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 MTA1Q13330 715 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 CCINQ13939 588 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 PIGHQ14442 188 aaPredicted RBP13.18□□□□□ -0.3
SS18-202ENST00000269138 ARL13BQ3SXY8 428 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 CYP4V2Q6ZWL3 525 aaPredicted RBP13.18□□□□□ -0.3
SS18-202ENST00000269138 LRRC8AQ8IWT6 810 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 CARNMT1Q8N4J0 409 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 ATRIPQ8WXE1 791 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 RFFLQ8WZ73 363 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 NTAN1Q96AB6 310 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 CLDN23Q96B33 292 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 LRFN3Q9BTN0 628 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 IRX2Q9BZI1 471 aaPredicted RBP13.18□□□□□ -0.3
SS18-202ENST00000269138 OSBPL2Q9H1P3 480 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 DLGAP2Q9P1A6 1054 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 OR12D3Q9UGF7 316 aa13.18□□□□□ -0.3
SS18-202ENST00000269138 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.17□□□□□ -0.3
SS18-202ENST00000269138 E9PAM4 449 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 MTA2O94776 668 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 APODP05090 189 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 DESP17661 470 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 DRD1P21728 446 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 GRIA2P42262 883 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 SCAPQ12770 1279 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 MESDQ14696 234 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 CA9Q16790 459 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 GEN1Q17RS7 908 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 C5orf22Q49AR2 442 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 ALFQ53S48 1182 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 FSCBQ5H9T9 825 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 RABGAP1LQ5R372 815 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 MPP7Q5T2T1 576 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 EMC10Q5UCC4 262 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 TXNRD3NBQ6F5E7 133 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 Q6ZS52 159 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 RHOT2Q8IXI1 618 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 NIPA2Q8N8Q9 360 aa13.17□□□□□ -0.3
SS18-202ENST00000269138 LMLNQ96KR4 655 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms