RNA–Protein interactions for RNA: ENST00000638141.1

CAPN3-221, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 2,358 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-221ENST00000638141 UHRF1Q96T88 793 aaPredicted RBP12.34□□□□□ -0.43
CAPN3-221ENST00000638141 TMEM117Q9H0C3 514 aa12.34□□□□□ -0.43
CAPN3-221ENST00000638141 KLHL25Q9H0H3 589 aa12.34□□□□□ -0.43
CAPN3-221ENST00000638141 RMND5AQ9H871 391 aa12.34□□□□□ -0.43
CAPN3-221ENST00000638141 GINM1Q9NU53 330 aa12.34□□□□□ -0.43
CAPN3-221ENST00000638141 THG1LQ9NWX6 298 aaKnown RBP12.34□□□□□ -0.43
CAPN3-221ENST00000638141 NARFQ9UHQ1 456 aa12.34□□□□□ -0.43
CAPN3-221ENST00000638141 N6AMT1Q9Y5N5 214 aa12.34□□□□□ -0.43
CAPN3-221ENST00000638141 FAM170AA1A519 330 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 J3QRK9 145 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 CLOCKO15516 846 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 IDH3BO43837 385 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 FOXD2O60548 495 aaPredicted RBP12.33□□□□□ -0.44
CAPN3-221ENST00000638141 C1QAP02745 245 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 ETS1P14921 441 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 RCVRNP35243 200 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 NLRP11P59045 1033 aaKnown RBP12.33□□□□□ -0.44
CAPN3-221ENST00000638141 TAS2R40P59535 323 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 KRT76Q01546 638 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 IFITM2Q01629 132 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 CCDC14Q49A88 953 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 C1orf220Q5T0J3 134 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 TEDDM1Q5T9Z0 273 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 ZNF280DQ6N043 979 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 TTC30BQ8N4P2 665 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 GRIN3AQ8TCU5 1115 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 TGFBRAP1Q8WUH2 860 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 TOP1MTQ969P6 601 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 LENG9Q96B70 501 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 FBXL8Q96CD0 374 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 NT5C1BQ96P26 610 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 ZNF395Q9H8N7 513 aaPredicted RBP12.33□□□□□ -0.44
CAPN3-221ENST00000638141 MAGEE1Q9HCI5 957 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 PARVAQ9NVD7 372 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 DNAJC16Q9Y2G8 782 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 LOC105371267A0A1B0GV96 52 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 ZNF195O14628 629 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 NOL3O60936 208 aaKnown RBP12.33□□□□□ -0.44
CAPN3-221ENST00000638141 ZC3H11AO75152 810 aaKnown RBP eCLIP12.33□□□□□ -0.44
CAPN3-221ENST00000638141 RFPL1O75677 317 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 ZBTB7AO95365 584 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 CHRNEQ04844 493 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 KLF10Q13118 480 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 RFTN1Q14699 578 aaPredicted RBP12.33□□□□□ -0.44
CAPN3-221ENST00000638141 FAM47CQ5HY64 1035 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 FAXCQ5TGI0 409 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 HEATR4Q86WZ0 1026 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 PACRGLQ8N7B6 248 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 ZNF280CQ8ND82 737 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 TMA16Q96EY4 203 aaKnown RBP12.33□□□□□ -0.44
CAPN3-221ENST00000638141 CNDP1Q96KN2 507 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 YME1L1Q96TA2 773 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 APOL6Q9BWW8 343 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 SLC13A1Q9BZW2 595 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 SMARCAD1Q9H4L7 1026 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 PDZD7Q9H5P4 517 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 XPNPEP1Q9NQW7 623 aa12.33□□□□□ -0.44
CAPN3-221ENST00000638141 DDX56Q9NY93 547 aaKnown RBP12.33□□□□□ -0.44
CAPN3-221ENST00000638141 MSI1O43347 362 aaKnown RBP12.32□□□□□ -0.44
CAPN3-221ENST00000638141 JRKO75564 520 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 UFL1O94874 794 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 S100BP04271 92 aaPredicted RBP12.32□□□□□ -0.44
CAPN3-221ENST00000638141 WEE2P0C1S8 567 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 CCNA2P20248 432 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 MYF6P23409 242 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 SREBF1P36956 1147 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 THOP1P52888 689 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 FER1L6Q2WGJ9 1857 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 NHSL2Q5HYW2 709 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 WDR78Q5VTH9 848 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 MBLAC2Q68D91 279 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 FAM117BQ6P1L5 589 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 MON1BQ7L1V2 547 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 MAVSQ7Z434 540 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 PGAM4Q8N0Y7 254 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 SIX6OS1Q8N1H7 587 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 KYQ8NBH2 561 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 XXYLT1Q8NBI6 393 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 PDZD8Q8NEN9 1154 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 STON2Q8WXE9 905 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 TFAP2CQ92754 450 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 ACCSQ96QU6 501 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 HSD17B14Q9BPX1 270 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 WDR12Q9GZL7 423 aaKnown RBP12.32□□□□□ -0.44
CAPN3-221ENST00000638141 COQ10BQ9H8M1 238 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 GPN2Q9H9Y4 310 aaPredicted RBP12.32□□□□□ -0.44
CAPN3-221ENST00000638141 SUCOQ9UBS9 1254 aaKnown RBP12.32□□□□□ -0.44
CAPN3-221ENST00000638141 IP6K2Q9UHH9 426 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 POU2F3Q9UKI9 436 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 ATP11BQ9Y2G3 1177 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 RBMX2Q9Y388 322 aaKnown RBP12.32□□□□□ -0.44
CAPN3-221ENST00000638141 FOCADQ5VW36 1801 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 UTRNP46939 3433 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 CCDC195A0A1B0GUA6 201 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 HTRA2O43464 458 aaPredicted RBP12.32□□□□□ -0.44
CAPN3-221ENST00000638141 TIMM44O43615 452 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 RNASEH2AO75792 299 aaKnown RBP12.32□□□□□ -0.44
CAPN3-221ENST00000638141 CYP3A4P08684 503 aa12.32□□□□□ -0.44
CAPN3-221ENST00000638141 XRCC1P18887 633 aaPredicted RBP12.32□□□□□ -0.44
CAPN3-221ENST00000638141 TGM1P22735 817 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms