RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 SYNJ2BP-COX16A0A087WUM0 186 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 GOLGA6L7A0A1B0GV03 622 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 ANTXRLA6NF34 631 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 GOLGA8SH3BPF8 625 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 K7EQS6 105 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 IRAK2O43187 625 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 LAMTOR5O43504 91 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 TULP3O75386 442 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 DAB1O75553 588 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 TRUB2O95900 331 aaKnown RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 IGLV3-25P01717 112 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 FTLP02792 175 aaPredicted RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 NOS2P35228 1153 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 EIF2DP41214 584 aaKnown RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 ARHGAP25P42331 645 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 GALCP54803 685 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 PTPN5P54829 565 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 KDSRQ06136 332 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 RING1Q06587 406 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 MESP2Q0VG99 397 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 NNTQ13423 1086 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 ZC3H12AQ5D1E8 599 aaKnown RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 FAM102AQ5T9C2 384 aaPredicted RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 FYB2Q5VWT5 728 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 NUGGCQ68CJ6 796 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 RHOT2Q8IXI1 618 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 ETFBKMTQ8IXQ9 262 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 FAM217AQ8IXS0 508 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 MCOLN2Q8IZK6 566 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 MAML2Q8IZL2 1156 aaPredicted RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 SYNPOQ8N3V7 929 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 CPXM2Q8N436 756 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 RFFLQ8WZ73 363 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 EZH1Q92800 747 aaPredicted RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 P2RY11Q96G91 374 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 SLC39A13Q96H72 371 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 FCRL2Q96LA5 508 aaPredicted RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 XPO6Q96QU8 1125 aaKnown RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 C11orf70Q9BRQ4 267 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 FAM204AQ9H8W3 233 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 ARHGEF4Q9NR80 690 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 DNAJC17Q9NVM6 304 aaKnown RBP10.24□□□□□ -0.77
CLN3-261ENST00000637686 PLK2Q9NYY3 685 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.24□□□□□ -0.77
CLN3-261ENST00000637686 MARK1Q9P0L2 795 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 COX16Q9P0S2 106 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 DEC1Q9P2X7 70 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 UVRAGQ9P2Y5 699 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 TLR6Q9Y2C9 796 aa10.24□□□□□ -0.77
CLN3-261ENST00000637686 TBC1D3BA6NDS4 549 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 M0QYT0 321 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 TRIM24O15164 1050 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 CACNG3O60359 315 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 ACSL4O60488 711 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 TSPAN3O60637 253 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 RNF40O75150 1001 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 KAT7O95251 611 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 LATS1O95835 1130 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 MOCS2O96007 188 aaPredicted RBP10.23□□□□□ -0.77
CLN3-261ENST00000637686 CYBBP04839 570 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 APODP05090 189 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 CYP1A2P05177 515 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 GBP1P32455 592 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 GRIA2P42262 883 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 MATKP42679 507 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 SLC11A2P49281 568 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 SEC13P55735 322 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 CSTF1Q05048 431 aaKnown RBP10.23□□□□□ -0.77
CLN3-261ENST00000637686 PTP4A2Q12974 167 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 NME3Q13232 169 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 EIF4EBP2Q13542 120 aaPredicted RBP10.23□□□□□ -0.77
CLN3-261ENST00000637686 FBXO43Q4G163 708 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 ADGRF1Q5T601 910 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 NADSYN1Q6IA69 706 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 PKN3Q6P5Z2 889 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 RFWD3Q6PCD5 774 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 NYAP1Q6ZVC0 841 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 ARCQ7LC44 396 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 PHTF2Q8N3S3 785 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 SPEM1Q8N4L4 309 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 C3orf20Q8ND61 904 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 DDI1Q8WTU0 396 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 RNF34Q969K3 372 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 AZIN2Q96A70 460 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 IER2Q9BTL4 223 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 MRPL47Q9HD33 250 aaKnown RBP10.23□□□□□ -0.77
CLN3-261ENST00000637686 METTL5Q9NRN9 209 aaKnown RBP10.23□□□□□ -0.77
CLN3-261ENST00000637686 C2orf42Q9NWW7 574 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 DDIT4Q9NX09 232 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 TAS2R14Q9NYV8 317 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 ADAM22Q9P0K1 906 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 XPO7Q9UIA9 1087 aaKnown RBP10.23□□□□□ -0.77
CLN3-261ENST00000637686 STOML2Q9UJZ1 356 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 ARIH1Q9Y4X5 557 aaPredicted RBP10.23□□□□□ -0.77
CLN3-261ENST00000637686 SCINQ9Y6U3 715 aa10.23□□□□□ -0.77
CLN3-261ENST00000637686 ATG2BQ96BY7 2078 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 A0A0A0MRY4 1105 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 RCCD1A6NED2 376 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 TMCO5BA8MYB1 307 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms