RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 HJURPQ8NCD3 748 aaPredicted RBP18.97■□□□□ 0.63
CLN3-259ENST00000637551 DNAJC7Q99615 494 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 HAUS4Q9H6D7 363 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 RETREG1Q9H6L5 497 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 SPATA6Q9NWH7 488 aaPredicted RBP18.97■□□□□ 0.63
CLN3-259ENST00000637551 EP300Q09472 2414 aaPredicted RBP18.96■□□□□ 0.63
CLN3-259ENST00000637551 EPG5Q9HCE0 2579 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 MED19A0JLT2 244 aaPredicted RBP18.96■□□□□ 0.63
CLN3-259ENST00000637551 ANKRD62A6NC57 917 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 SIGLEC16A6NMB1 481 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 TIMM44O43615 452 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 EGFP01133 1207 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 DESP17661 470 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 CXCL12P48061 93 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 DGKGP49619 791 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 PIK3R6Q5UE93 754 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 E4F1Q66K89 784 aaPredicted RBP18.96■□□□□ 0.63
CLN3-259ENST00000637551 HGSNATQ68CP4 663 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 STRADAQ7RTN6 431 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 MCOLN2Q8IZK6 566 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 CAMKK1Q8N5S9 505 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 RNF214Q8ND24 703 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 SLC30A5Q8TAD4 765 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 WFIKKN2Q8TEU8 576 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 TMA16Q96EY4 203 aaKnown RBP18.96■□□□□ 0.63
CLN3-259ENST00000637551 C11orf70Q9BRQ4 267 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 DNAJC17Q9NVM6 304 aaKnown RBP18.96■□□□□ 0.63
CLN3-259ENST00000637551 ARHGEF38Q9NXL2 777 aa18.96■□□□□ 0.63
CLN3-259ENST00000637551 TCRBV5S1A1TA0A578 114 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 C2CD4BA6NLJ0 364 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 K7EQS6 105 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 M0QYT0 321 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 SCAMP3O14828 347 aaKnown RBP18.95■□□□□ 0.62
CLN3-259ENST00000637551 CHRM1P11229 460 aaPredicted RBP18.95■□□□□ 0.62
CLN3-259ENST00000637551 KRT3P12035 628 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 HOXD9P28356 352 aaPredicted RBP18.95■□□□□ 0.62
CLN3-259ENST00000637551 SDC4P31431 198 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 FLT3P36888 993 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 OXCT1P55809 520 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 MS4A13Q5J8X5 152 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 TPGS1Q6ZTW0 290 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 ZNF571Q7Z3V5 609 aaPredicted RBP18.95■□□□□ 0.62
CLN3-259ENST00000637551 C12orf40Q86WS4 652 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 CNGA4Q8IV77 575 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 USP33Q8TEY7 942 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 FNIP1Q8TF40 1166 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 DDI1Q8WTU0 396 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 C1orf74Q96LT6 269 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 ISCUQ9H1K1 167 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 FBRSL1Q9HCM7 1045 aaKnown RBP18.95■□□□□ 0.62
CLN3-259ENST00000637551 SEPT11Q9NVA2 429 aaKnown RBP18.95■□□□□ 0.62
CLN3-259ENST00000637551 PCDHGA2Q9Y5H1 932 aa18.95■□□□□ 0.62
CLN3-259ENST00000637551 RNF40O75150 1001 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 RTN2O75298 545 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 GRAP2O75791 330 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 CISD3P0C7P0 127 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 TDGF1P13385 188 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 RDXP35241 583 aaKnown RBP18.94■□□□□ 0.62
CLN3-259ENST00000637551 KIR2DL1P43626 348 aaPredicted RBP18.94■□□□□ 0.62
CLN3-259ENST00000637551 AIF1P55008 147 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 GAS6Q14393 721 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 C5orf22Q49AR2 442 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 ZC3H12AQ5D1E8 599 aaKnown RBP18.94■□□□□ 0.62
CLN3-259ENST00000637551 OTUD1Q5VV17 481 aaPredicted RBP18.94■□□□□ 0.62
CLN3-259ENST00000637551 ANKS1BQ7Z6G8 1248 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 MAML2Q8IZL2 1156 aaPredicted RBP18.94■□□□□ 0.62
CLN3-259ENST00000637551 OR8K1Q8NGG5 319 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 CENPIQ92674 756 aaPredicted RBP18.94■□□□□ 0.62
CLN3-259ENST00000637551 EZH1Q92800 747 aaPredicted RBP18.94■□□□□ 0.62
CLN3-259ENST00000637551 MRFAP1L1Q96HT8 127 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 NCAPGQ9BPX3 1015 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 PARVAQ9NVD7 372 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 SCINQ9Y6U3 715 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 NCOR2Q9Y618 2525 aa18.94■□□□□ 0.62
CLN3-259ENST00000637551 SSU72P8A0A1W2PR75 194 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 HNRNPLP14866 589 aaKnown RBP eCLIP18.93■□□□□ 0.62
CLN3-259ENST00000637551 CASP14P31944 242 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 CNR2P34972 360 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 SULT1E1P49888 294 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 NRG1Q02297 640 aaPredicted RBP18.93■□□□□ 0.62
CLN3-259ENST00000637551 DMC1Q14565 340 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 TSR1Q2NL82 804 aaKnown RBP18.93■□□□□ 0.62
CLN3-259ENST00000637551 TDRD12Q587J7 1177 aaKnown RBP18.93■□□□□ 0.62
CLN3-259ENST00000637551 RABGAP1LQ5R372 815 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 PPP1R15BQ5SWA1 713 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 NADSYN1Q6IA69 706 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 PLEKHA7Q6IQ23 1121 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 DNAJC24Q6P3W2 148 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 KIAA0907Q7Z7F0 614 aaPredicted RBP18.93■□□□□ 0.62
CLN3-259ENST00000637551 ADAM32Q8TC27 787 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 UCMAQ8WVF2 138 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 HAPLN3Q96S86 360 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 PPP1R9BQ96SB3 815 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 PRMT1Q99873 361 aaKnown RBP18.93■□□□□ 0.62
CLN3-259ENST00000637551 SELENOOQ9BVL4 669 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 WDCPQ9H6R7 721 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 METTL5Q9NRN9 209 aaKnown RBP18.93■□□□□ 0.62
CLN3-259ENST00000637551 RBM12Q9NTZ6 932 aaKnown RBP18.93■□□□□ 0.62
CLN3-259ENST00000637551 PIGVQ9NUD9 493 aa18.93■□□□□ 0.62
CLN3-259ENST00000637551 MMP17Q9ULZ9 603 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms