RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 NEDD8-MDP1E9PL57 170 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 M0R296 226 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 MYO1FO00160 1098 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 STK25O00506 426 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 HOXC11O43248 304 aaPredicted RBP19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 TSPAN3O60637 253 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 ATXN1P54253 815 aaKnown RBP19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 HDAC4P56524 1084 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 OGDHQ02218 1023 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 MPPE1Q53F39 396 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 FAM133BQ5BKY9 247 aaKnown RBP19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 ACBD5Q5T8D3 534 aaPredicted RBP19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 IER5LQ5T953 404 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 SH3PXD2AQ5TCZ1 1133 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 SCYL2Q6P3W7 929 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 ZNF852Q6ZMS4 543 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 RHOT2Q8IXI1 618 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 TMA16Q96EY4 203 aaKnown RBP19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 IP6K2Q9UHH9 426 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 LCMT1Q9UIC8 334 aa19.8■□□□□ 0.76
SQSTM1-216ENST00000626660 GOLGA6L7A0A1B0GV03 622 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 F5H5T6 163 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 TRDMT1O14717 391 aaKnown RBP19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 PAGE1O75459 146 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 TACR2P21452 398 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 STARD6P59095 220 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 KRT83P78385 493 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 PIGHQ14442 188 aaPredicted RBP19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 ACAP1Q15027 740 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 RAP1GAP2Q684P5 730 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 NADSYN1Q6IA69 706 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 RFWD3Q6PCD5 774 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 TXLNBQ8N3L3 684 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 HJURPQ8NCD3 748 aaPredicted RBP19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 DDI1Q8WTU0 396 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 RFFLQ8WZ73 363 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 FAM3CQ92520 227 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 BHMTQ93088 406 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 XPO6Q96QU8 1125 aaKnown RBP19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 SIK2Q9H0K1 926 aa19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 XPO7Q9UIA9 1087 aaKnown RBP19.79■□□□□ 0.76
SQSTM1-216ENST00000626660 MIA3Q5JRA6 1907 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 PTMAP06454 111 aaKnown RBP19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 TYRP14679 529 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 SLC6A4P31645 630 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 PREPLQ4J6C6 727 aaPredicted RBP19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 RAB6CQ53S08 254 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 MS4A13Q5J8X5 152 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 RABGAP1LQ5R372 815 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 PIK3R6Q5UE93 754 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 LRRC8AQ8IWT6 810 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 LGI2Q8N0V4 545 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 SLC35G2Q8TBE7 412 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 NTAN1Q96AB6 310 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 HAPLN3Q96S86 360 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 P2RY13Q9BPV8 354 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 RAB6CQ9H0N0 254 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 TBC1D17Q9HA65 648 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 COL4A3Q01955 1670 aa19.78■□□□□ 0.76
SQSTM1-216ENST00000626660 KANSL1LA0AUZ9 987 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 ARHGAP6O43182 974 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 PENKP01210 267 aaPredicted RBP19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 ADRA1BP35368 520 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 EIF2DP41214 584 aaKnown RBP19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 ZNF252P-AS1Q0IIN9 211 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 FYB2Q5VWT5 728 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 LRRC31Q6UY01 552 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 SLFN11Q7Z7L1 901 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 KIAA1328Q86T90 577 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 CCDC117Q8IWD4 279 aaPredicted RBP19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 NIPA2Q8N8Q9 360 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 CD101Q93033 1021 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 NELL2Q99435 816 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 PLK2Q9NYY3 685 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 HS3ST4Q9Y661 456 aa19.77■□□□□ 0.76
SQSTM1-216ENST00000626660 PRR33A8MZF0 331 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 GFRA2O00451 464 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 PRPSAP2O60256 369 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 CACNG3O60359 315 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 TBL1XO60907 577 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 CD72P21854 359 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 AIF1P55008 147 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 AUHQ13825 339 aaKnown RBP19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 UBXN2BQ14CS0 331 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 PON2Q15165 354 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 GAB4Q2WGN9 574 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 EFHC2Q5JST6 749 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 MPP7Q5T2T1 576 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 TTC39BQ5VTQ0 682 aaPredicted RBP19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 TXNDC11Q6PKC3 985 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 NAT16Q8N8M0 369 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 ACRBPQ8NEB7 543 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 FLCNQ8NFG4 579 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 BTBD6Q96KE9 485 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 C1orf74Q96LT6 269 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 PRMT1Q99873 361 aaKnown RBP19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 OSGEPQ9NPF4 335 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 C11orf16Q9NQ32 467 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 DNAJC17Q9NVM6 304 aaKnown RBP19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms