RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 THOC7Q6I9Y2 204 aaKnown RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 CYP2R1Q6VVX0 501 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 ABRAQ8N0Z2 381 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 PURBQ96QR8 312 aaKnown RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 MTG1Q9BT17 334 aaPredicted RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 SPAG4Q9NPE6 437 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 ABCB10Q9NRK6 738 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 CHST7Q9NS84 486 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 LRFN2Q9ULH4 789 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 WBP11Q9Y2W2 641 aaKnown RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 PRG3Q9Y2Y8 225 aaPredicted RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 ASMTLO95671 621 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 NAA20P61599 178 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 TMEM132DQ14C87 1099 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 SCAIQ8N9R8 606 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 RASSF5Q8WWW0 418 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 FAM120BQ96EK7 910 aaKnown RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 PLK2Q9NYY3 685 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 ADAM28Q9UKQ2 775 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 GRIN2DO15399 1336 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 CLUHO75153 1309 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 ARHGEF28Q8N1W1 1705 aaKnown RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 FMN2Q9NZ56 1722 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 TRIM43BA6NCK2 446 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 CYP1A2P05177 515 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 ANKS3Q6ZW76 656 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 PRELID2Q8N945 189 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 GRPEL2Q8TAA5 225 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 DENND2DQ9H6A0 471 aaPredicted RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 DNPEPQ9ULA0 475 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 CCDC154A6NI56 674 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 GAS2O43903 313 aaKnown RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 TNFRSF21O75509 655 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 LRPAP1P30533 357 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 RTP1P59025 263 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 CYP4Z1Q86W10 505 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 LDHDQ86WU2 507 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 ITFG1Q8TB96 612 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 FAM45AQ8TCE6 357 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 MMTAG2Q9BU76 263 aaKnown RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 EHD3Q9NZN3 535 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 AFF4Q9UHB7 1163 aaKnown RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 ING4Q9UNL4 249 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 COQ6Q9Y2Z9 468 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 MTF2Q9Y483 593 aaPredicted RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 GPC6Q9Y625 555 aaPredicted RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 SLIT1O75093 1534 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 UBE2Q2LH0YL09 131 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 SLC26A3P40879 764 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 QPRTQ15274 297 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 TYSND1Q2T9J0 566 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 GOLGA7BQ2TAP0 167 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 SCARA3Q6AZY7 606 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 DENND5AQ6IQ26 1287 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 PSMA8Q8TAA3 256 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 SPATA20Q8TB22 786 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 SYTL2Q9HCH5 934 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 CCDC59Q9P031 241 aaKnown RBP9.11□□□□□ -0.95
VCL-206ENST00000623461 RAPGEFL1Q9UHV5 662 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 KNDC1Q76NI1 1749 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 ANXA6P08133 673 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 HOXB6P17509 224 aaKnown RBP9.11□□□□□ -0.95
VCL-206ENST00000623461 DNAJB2P25686 324 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 GLRBP48167 497 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 IREB2P48200 963 aaKnown RBP9.11□□□□□ -0.95
VCL-206ENST00000623461 NR2C2P49116 596 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 ACADVLP49748 655 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 MAPK10P53779 464 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 PROX1Q92786 737 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.11□□□□□ -0.951e-8■■■■□ 20.2
VCL-206ENST00000623461 ZNF221Q9UK13 617 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 CDH9Q9ULB4 789 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 DUSP12Q9UNI6 340 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 VDRP11473 427 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 ZNF57Q68EA5 555 aaPredicted RBP9.11□□□□□ -0.95
VCL-206ENST00000623461 SYNE4Q8N205 404 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 ZNF276Q8N554 614 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 ASZ1Q8WWH4 475 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 PRDM16Q9HAZ2 1276 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 CCNB1IP1Q9NPC3 277 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 ENTPD7Q9NQZ7 604 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 SLC30A1Q9Y6M5 507 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 MAFGO15525 162 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 ITGA2BP08514 1039 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 NPY2RP49146 381 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 PSME3P61289 254 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 KBTBD2Q8IY47 623 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 SSU72Q9NP77 194 aaKnown RBP9.11□□□□□ -0.95
VCL-206ENST00000623461 KRCC1Q9NPI7 259 aaPredicted RBP9.11□□□□□ -0.95
VCL-206ENST00000623461 LNPEPQ9UIQ6 1025 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 KIDINS220Q9ULH0 1771 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 A0A087X1B8 175 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 BTN3A3O00478 584 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 FGFR3P22607 806 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 MYL6P60660 151 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 RNF148Q8N7C7 305 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 MAGEE2Q8TD90 523 aaPredicted RBP9.11□□□□□ -0.95
VCL-206ENST00000623461 MBOAT7Q96N66 472 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 NMRAL1Q9HBL8 299 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 CHST12Q9NRB3 414 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms