RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 FUOMA2VDF0 154 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 CST8O60676 142 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 BMP10O95393 424 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 ESRRBO95718 433 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 STT3AP46977 705 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 RPL7AP62424 266 aaKnown RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 IKQ13123 557 aaPredicted RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 TEDDM1Q5T9Z0 273 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 B3GNT9Q6UX72 402 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 MAP4K3Q8IVH8 894 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 SCAIQ8N9R8 606 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 RIN3Q8TB24 985 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 ATP2A3Q93084 1043 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 LRRC39Q96DD0 335 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 CFAP36Q96G28 342 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 PNPLA3Q9NST1 481 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 SELENONQ9NZV5 590 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 ZC3H7BQ9UGR2 993 aaKnown RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 CDH7Q9ULB5 785 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 F8VP50 259 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 SLC16A4O15374 487 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 C1QAP02745 245 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 PDGFRBP09619 1106 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 NCF2P19878 526 aaPredicted RBP11.12□□□□□ -0.63
UPF3A-212ENST00000619079 TMED10P49755 219 aaKnown RBP11.12□□□□□ -0.63
UPF3A-212ENST00000619079 BCAP31P51572 246 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 NLRP11P59045 1033 aaKnown RBP11.12□□□□□ -0.63
UPF3A-212ENST00000619079 DYNLT1P63172 113 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 MRPS22P82650 360 aaKnown RBP11.12□□□□□ -0.63
UPF3A-212ENST00000619079 ZNF252P-AS1Q0IIN9 211 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 MTM1Q13496 603 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 GK3PQ14409 553 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 KCNJ11Q14654 390 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 CYTH1Q15438 398 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 TGFBIQ15582 683 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 PAOXQ6QHF9 649 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 ISLR2Q6UXK2 745 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 BNC2Q6ZN30 1099 aaPredicted RBP11.12□□□□□ -0.63
UPF3A-212ENST00000619079 TIFABQ6ZNK6 161 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 ZCCHC23Q6ZST2 131 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 GPR141Q7Z602 305 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 TERB1Q8NA31 727 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 ACMSDQ8TDX5 336 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 KBTBD7Q8WVZ9 684 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 BRI3BPQ8WY22 251 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 RMND5BQ96G75 393 aaPredicted RBP11.12□□□□□ -0.63
UPF3A-212ENST00000619079 GMCL1Q96IK5 515 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 MS4A4AQ96JQ5 239 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 ZNF778Q96MU6 729 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 MCEEQ96PE7 176 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 RANBP9Q96S59 729 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 PI4K2AQ9BTU6 479 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 TBX20Q9UMR3 447 aa11.12□□□□□ -0.63
UPF3A-212ENST00000619079 LOC100653049A0A140TA62 436 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 ARHGEF37A1IGU5 675 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 C3orf70A6NLC5 250 aaPredicted RBP11.11□□□□□ -0.63
UPF3A-212ENST00000619079 H3BNH8 94 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 APOC4-APOC2K7ER74 178 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 KRT34O76011 436 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 LSM8O95777 96 aaKnown RBP11.11□□□□□ -0.63
UPF3A-212ENST00000619079 NDUFB10O96000 172 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 APOC2P02655 101 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 RARRES1P49788 294 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 EIF3EP60228 445 aaKnown RBP11.11□□□□□ -0.63
UPF3A-212ENST00000619079 CDKL1Q00532 357 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 SEPT6Q14141 434 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 HADHQ16836 314 aaKnown RBP11.11□□□□□ -0.63
UPF3A-212ENST00000619079 MAP7D1Q3KQU3 841 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 KRT80Q6KB66 452 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 C15orf39Q6ZRI6 1047 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 UBR7Q8N806 425 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 FAM71DQ8N9W8 422 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 DEPTORQ8TB45 409 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 LPAR1Q92633 364 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 SHCBP1LQ9BZQ2 653 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 COPS7BQ9H9Q2 264 aaPredicted RBP11.11□□□□□ -0.63
UPF3A-212ENST00000619079 FAM32AQ9Y421 112 aaKnown RBP11.11□□□□□ -0.63
UPF3A-212ENST00000619079 MYOCOSA0A1B0GUC4 107 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 PRSS51A0A1B0GVH4 220 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 GLRA3O75311 464 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 APOEP02649 317 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 CCR3P51677 355 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 PEX3P56589 373 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 SNAP25P60880 206 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 BCL2A1Q16548 175 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 TAZQ16635 292 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 TREML2Q5T2D2 321 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 NIPAL1Q6NVV3 410 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 ELMSAN1Q6PJG2 1045 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 DCDC5Q6ZRR9 648 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 SETD3Q86TU7 594 aaPredicted RBP11.11□□□□□ -0.63
UPF3A-212ENST00000619079 GPR180Q86V85 440 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 UNC45BQ8IWX7 931 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 GALNT4Q8N4A0 578 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 TAB3Q8N5C8 712 aaPredicted RBP11.11□□□□□ -0.63
UPF3A-212ENST00000619079 KYQ8NBH2 561 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 GMCL1P1Q8NEA9 526 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 HIPK3Q9H422 1215 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 RPAP3Q9H6T3 665 aaPredicted RBP11.11□□□□□ -0.63
UPF3A-212ENST00000619079 SLC8A2Q9UPR5 921 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms