RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 NT5C3BQ969T7 300 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 SYT11Q9BT88 431 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 NUCKS1Q9H1E3 243 aaKnown RBP17.48■□□□□ 0.39
TRIM28-215ENST00000601150 SEMA4AQ9H3S1 761 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 METTL5Q9NRN9 209 aaKnown RBP17.48■□□□□ 0.39
TRIM28-215ENST00000601150 POLR3BQ9NW08 1133 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-215ENST00000601150 TMEM51Q9NW97 253 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 TMEM59LQ9UK28 342 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 MMP17Q9ULZ9 603 aa17.48■□□□□ 0.39
TRIM28-215ENST00000601150 TYW5A2RUC4 315 aaKnown RBP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 PRRT4C9JH25 899 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 CBFA2T2O43439 604 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 TBL1XO60907 577 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 FLT3P36888 993 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 PRKCIP41743 596 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 SGSHP51688 502 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 GSCP56915 257 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 KLHL30Q0D2K2 578 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 MS4A13Q5J8X5 152 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 EOGTQ5NDL2 527 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 OTUD1Q5VV17 481 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 E4F1Q66K89 784 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 PPP1R2P3Q6NXS1 205 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 SND1Q7KZF4 910 aaKnown RBP eCLIP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 TRMT11Q7Z4G4 463 aaKnown RBP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 PHLDB2Q86SQ0 1253 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 CAMKK1Q8N5S9 505 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 ZNF513Q8N8E2 541 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 TXNDC5Q8NBS9 432 aaKnown RBP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 PGAP3Q96FM1 320 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 PRICKLE1Q96MT3 831 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 XPO7Q9UIA9 1087 aaKnown RBP17.47■□□□□ 0.39
TRIM28-215ENST00000601150 CLEC4EQ9ULY5 219 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 EML5Q05BV3 1969 aa17.47■□□□□ 0.39
TRIM28-215ENST00000601150 LILRB5O75023 590 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 TFE3P19532 575 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-215ENST00000601150 TACR2P21452 398 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 FNTBP49356 437 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 ZBED6P86452 979 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 DEUP1Q05D60 604 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 C1QBPQ07021 282 aaKnown RBP17.46■□□□□ 0.39
TRIM28-215ENST00000601150 DMWDQ09019 674 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 GEN1Q17RS7 908 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 RAP1GAP2Q684P5 730 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 RNF43Q68DV7 783 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 HEATR6Q6AI08 1181 aaKnown RBP17.46■□□□□ 0.39
TRIM28-215ENST00000601150 ACAD10Q6JQN1 1059 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 TRNP1Q6NT89 227 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 MON1BQ7L1V2 547 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 ANKS1BQ7Z6G8 1248 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 LONP2Q86WA8 852 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 CHSY1Q86X52 802 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 LGI2Q8N0V4 545 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 ZNF557Q8N988 423 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-215ENST00000601150 SYN2Q92777 582 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-215ENST00000601150 NKD2Q969F2 451 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-215ENST00000601150 HHIPQ96QV1 700 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 TBCBQ99426 244 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 HAUS4Q9H6D7 363 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 PIGVQ9NUD9 493 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 CALCOCO1Q9P1Z2 691 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 STIM2Q9P246 746 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 CAPN11Q9UMQ6 739 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 PAXBP1Q9Y5B6 917 aa17.46■□□□□ 0.39
TRIM28-215ENST00000601150 ITIH6Q6UXX5 1313 aa17.46■□□□□ 0.38
TRIM28-215ENST00000601150 CCDC163A0A0D9SF12 145 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 F5H5T6 163 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 SGK1O00141 431 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 APBB3O95704 486 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 HOXC13P31276 330 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 CXCR3P49682 368 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 DGKEP52429 567 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 RPS24P62847 133 aaKnown RBP17.45■□□□□ 0.38
TRIM28-215ENST00000601150 EIF4HQ15056 248 aaKnown RBP17.45■□□□□ 0.38
TRIM28-215ENST00000601150 E2F5Q15329 346 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 BRMS1LQ5PSV4 323 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 EGFLAMQ63HQ2 1017 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 ZNF571Q7Z3V5 609 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-215ENST00000601150 WDR5BQ86VZ2 330 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 EMC1Q8N766 993 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 C3orf20Q8ND61 904 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 OLIG1Q8TAK6 271 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 CPLX3Q8WVH0 158 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 MYEOVQ96EZ4 313 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 CFAP57Q96MR6 1250 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 SELENOOQ9BVL4 669 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 ADAM33Q9BZ11 813 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 WDCPQ9H6R7 721 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 ZDHHC4Q9NPG8 344 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 HCN2Q9UL51 889 aa17.45■□□□□ 0.38
TRIM28-215ENST00000601150 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.45■□□□□ 0.382e-9■□□□□ 9.4
TRIM28-215ENST00000601150 ADAM23O75077 832 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 GYPCP04921 128 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 KRT3P12035 628 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 HNRNPLP14866 589 aaKnown RBP eCLIP17.44■□□□□ 0.38
TRIM28-215ENST00000601150 NTSR1P30989 418 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 RDXP35241 583 aaKnown RBP17.44■□□□□ 0.38
TRIM28-215ENST00000601150 PXNP49023 591 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-215ENST00000601150 CRY1Q16526 586 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 SDE2Q6IQ49 451 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms