RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 APBB3O95704 486 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 TIE1P35590 1138 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 CDK17Q00537 523 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 FANCCQ00597 558 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 ENPP2Q13822 863 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 EIF4HQ15056 248 aaKnown RBP16.75■□□□□ 0.27
TRIM28-213ENST00000598355 GEN1Q17RS7 908 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 EGFLAMQ63HQ2 1017 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 TRNP1Q6NT89 227 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 TMEM92Q6UXU6 159 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 CACNA2D4Q7Z3S7 1137 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 TRMT11Q7Z4G4 463 aaKnown RBP16.75■□□□□ 0.27
TRIM28-213ENST00000598355 IRF2BP2Q7Z5L9 587 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 TXNDC5Q8NBS9 432 aaKnown RBP16.75■□□□□ 0.27
TRIM28-213ENST00000598355 DDI1Q8WTU0 396 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 CPA5Q8WXQ8 436 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 MYEOVQ96EZ4 313 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 BTN2A3PQ96KV6 586 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 PRMT1Q99873 361 aaKnown RBP16.75■□□□□ 0.27
TRIM28-213ENST00000598355 EDEM3Q9BZQ6 932 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 NUCKS1Q9H1E3 243 aaKnown RBP16.75■□□□□ 0.27
TRIM28-213ENST00000598355 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.75■□□□□ 0.27
TRIM28-213ENST00000598355 DDIT4Q9NX09 232 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 XPO7Q9UIA9 1087 aaKnown RBP16.75■□□□□ 0.27
TRIM28-213ENST00000598355 NUP205Q92621 2012 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 CEP192Q8TEP8 1941 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 APOEP02649 317 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 FERP16591 822 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 HLA-FP30511 346 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 FLT3P36888 993 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 DGKEP52429 567 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 CLEC16AQ2KHT3 1053 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 C2CD6Q53TS8 623 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 ZC3H12AQ5D1E8 599 aaKnown RBP16.74■□□□□ 0.27
TRIM28-213ENST00000598355 MS4A13Q5J8X5 152 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 EOGTQ5NDL2 527 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 FAM102AQ5T9C2 384 aaPredicted RBP16.74■□□□□ 0.27
TRIM28-213ENST00000598355 E4F1Q66K89 784 aaPredicted RBP16.74■□□□□ 0.27
TRIM28-213ENST00000598355 RFWD3Q6PCD5 774 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 ANKS1BQ7Z6G8 1248 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 PHF13Q86YI8 300 aaPredicted RBP16.74■□□□□ 0.27
TRIM28-213ENST00000598355 CCDC33Q8N5R6 958 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 WFDC5Q8TCV5 224 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 TMA16Q96EY4 203 aaKnown RBP16.74■□□□□ 0.27
TRIM28-213ENST00000598355 LMLNQ96KR4 655 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 GABRG3Q99928 467 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 DDX50Q9BQ39 737 aaKnown RBP16.74■□□□□ 0.27
TRIM28-213ENST00000598355 FAM204AQ9H8W3 233 aa16.74■□□□□ 0.27
TRIM28-213ENST00000598355 SMG5Q9UPR3 1016 aaKnown RBP16.74■□□□□ 0.27
TRIM28-213ENST00000598355 ABCA7Q8IZY2 2146 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 THADAQ6YHU6 1953 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 GOLGA6L7A0A1B0GV03 622 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 HRO43593 1189 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 TSPAN3O60637 253 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 SERPINC1P01008 464 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 SLC2A3P11169 496 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 TFE3P19532 575 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-213ENST00000598355 NTSR1P30989 418 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 CCR1P32246 355 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 GBP1P32455 592 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 PRKCIP41743 596 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 TPM4P67936 248 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 MTA1Q13330 715 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 NFKBIBQ15653 356 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 TMEM215Q68D42 235 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 MMS22LQ6ZRQ5 1243 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 MON1BQ7L1V2 547 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 ATP6V0D2Q8N8Y2 350 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 ZNF557Q8N988 423 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-213ENST00000598355 HJURPQ8NCD3 748 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-213ENST00000598355 ZDHHC4Q9NPG8 344 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 TMEM51Q9NW97 253 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.73■□□□□ 0.27
TRIM28-213ENST00000598355 AIPL1Q9NZN9 384 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 STAP1Q9ULZ2 295 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 SDK1Q7Z5N4 2213 aa16.73■□□□□ 0.27
TRIM28-213ENST00000598355 A0A1W2PQF6 199 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 TCRBV5S1A1TA0A578 114 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 LRRC53A6NM62 1247 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 I6L893 689 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-213ENST00000598355 NPC1O15118 1278 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 AXIN1O15169 862 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 CCDC172P0C7W6 258 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 CXCR3P49682 368 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 SLC25A52Q3SY17 297 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 BRMS1LQ5PSV4 323 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 HEATR6Q6AI08 1181 aaKnown RBP16.72■□□□□ 0.27
TRIM28-213ENST00000598355 LRSAM1Q6UWE0 723 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 MDGA1Q8NFP4 955 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 TSTD1Q8NFU3 115 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 SLC30A5Q8TAD4 765 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 WFIKKN2Q8TEU8 576 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 GAB3Q8WWW8 586 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 ACOX2Q99424 681 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 AGPAT1Q99943 283 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 C11orf70Q9BRQ4 267 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 PIGVQ9NUD9 493 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 ARHGEF38Q9NXL2 777 aa16.72■□□□□ 0.27
TRIM28-213ENST00000598355 THAP10Q9P2Z0 257 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-213ENST00000598355 A0A1W2PQJ5 194 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms