RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 INO80BQ9C086 356 aaPredicted RBP15.3■□□□□ 0.04
SMARCA4-219ENST00000592604 PNPOQ9NVS9 261 aa15.3■□□□□ 0.04
SMARCA4-219ENST00000592604 POMPQ9Y244 141 aa15.3■□□□□ 0.04
SMARCA4-219ENST00000592604 SSX2IPQ9Y2D8 614 aa15.3■□□□□ 0.04
SMARCA4-219ENST00000592604 PYGLP06737 847 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 ZFXP17010 805 aaPredicted RBP15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 PRDX6P30041 224 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 NDST1P52848 882 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 EPHB1P54762 984 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 GBE1Q04446 702 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 NAB1Q13506 487 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 GDPD5Q8WTR4 605 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 AFG1LQ8WV93 481 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 QKIQ96PU8 341 aaKnown RBP eCLIP15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 XPNPEP3Q9NQH7 507 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 AP1G1O43747 822 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 SLC6A3Q01959 620 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 PDCD2Q16342 344 aaPredicted RBP15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 DPYSL2Q16555 572 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 PDPK2PQ6A1A2 396 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 KCNT2Q6UVM3 1135 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 DPH6Q7L8W6 267 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 C10orf107Q8IVU9 208 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 UNC5BQ8IZJ1 945 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 PIP4K2CQ8TBX8 421 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 CDKL2Q92772 493 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 HPDLQ96IR7 371 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 CHCHD3Q9NX63 227 aaKnown RBP15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 MORF4L1Q9UBU8 362 aa15.29■□□□□ 0.04
SMARCA4-219ENST00000592604 WDR27A2RRH5 827 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 LGR5O75473 907 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 ITGAXP20702 1163 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 ARRB2P32121 409 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 AQP4P55087 323 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 HDAC4P56524 1084 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 MBTD1Q05BQ5 628 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 DEUP1Q05D60 604 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 STILQ15468 1287 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 PPP6R3Q5H9R7 873 aaPredicted RBP15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 TTC39CQ8N584 583 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 TFB1MQ8WVM0 346 aaKnown RBP15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 BTBD9Q96Q07 612 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 ASB7Q9H672 318 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 GTF2IRD1Q9UHL9 959 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 SF3B1O75533 1304 aaKnown RBP eCLIP15.28■□□□□ 0.045e-6■■■■■ 148.7
SMARCA4-219ENST00000592604 PDE5AO76074 875 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 SORBS2O94875 1100 aaKnown RBP15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 STAG3L1P0CL83 205 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 PEX2P28328 305 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 ABCE1P61221 599 aaKnown RBP15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 LSAMPQ13449 338 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 LRRC36Q1X8D7 754 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 PKDCCQ504Y2 493 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 SDCCAG8Q86SQ7 713 aaPredicted RBP15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 TMEM110Q86TL2 294 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 KBTBD6Q86V97 674 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 FBXW8Q8N3Y1 598 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 NME8Q8N427 588 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 SLC4A5Q9BY07 1137 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 MINDY3Q9H8M7 445 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 COPG2Q9UBF2 871 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 PCDHGA4Q9Y5G9 962 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 TRIP11Q15643 1979 aa15.28■□□□□ 0.04
SMARCA4-219ENST00000592604 SETSIPP0DME0 302 aa15.27■□□□□ 0.04
SMARCA4-219ENST00000592604 FDFT1P37268 417 aa15.27■□□□□ 0.04
SMARCA4-219ENST00000592604 PRKG1Q13976 671 aa15.27■□□□□ 0.04
SMARCA4-219ENST00000592604 PMF1Q6P1K2 205 aa15.27■□□□□ 0.04
SMARCA4-219ENST00000592604 LRRC8BQ6P9F7 803 aa15.27■□□□□ 0.04
SMARCA4-219ENST00000592604 DEFB107AQ8IZN7 70 aa15.27■□□□□ 0.04
SMARCA4-219ENST00000592604 DTNBP1Q96EV8 351 aa15.27■□□□□ 0.04
SMARCA4-219ENST00000592604 EPB41L1Q9H4G0 881 aa15.27■□□□□ 0.04
SMARCA4-219ENST00000592604 IFT122Q9HBG6 1241 aa15.27■□□□□ 0.04
SMARCA4-219ENST00000592604 HESX1Q9UBX0 185 aa15.27■□□□□ 0.04
SMARCA4-219ENST00000592604 H3BNX3 289 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 STAU1O95793 577 aaKnown RBP15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 ITGA2BP08514 1039 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 ACAT1P24752 427 aaKnown RBP15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 GRIA2P42262 883 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 RGS7P49802 495 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 MTTPP55157 894 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 SH3BGRP55822 239 aaPredicted RBP15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 DLG1Q12959 904 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 HEATR6Q6AI08 1181 aaKnown RBP15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 PLPPR4Q7Z2D5 763 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 RSPH3Q86UC2 560 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 WRNIP1Q96S55 665 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 NT5C1AQ9BXI3 368 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 SLC17A6Q9P2U8 582 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 MYO18AQ92614 2054 aaKnown RBP15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 OPHN1O60890 802 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 GJB1P08034 283 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 IQCF3P0C7M6 154 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 RALBP11234 206 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 DESP17661 470 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 ANKRD20A4Q4UJ75 823 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 FRMD7Q6ZUT3 714 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 ARNTL2Q8WYA1 636 aa15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 ZNF668Q96K58 619 aaPredicted RBP15.27■□□□□ 0.03
SMARCA4-219ENST00000592604 MTMR10Q9NXD2 777 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms