RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 RPLP0P6Q8NHW5 317 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 PLD4Q96BZ4 506 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 LSM14BQ9BX40 385 aaKnown RBP11.7□□□□□ -0.54
SMAD4-211ENST00000590499 DCLK3Q9C098 648 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 VPS16Q9H269 839 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 LHX5Q9H2C1 402 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 EPC1Q9H2F5 836 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 ARHGEF4Q9NR80 690 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 POLR3BQ9NW08 1133 aaPredicted RBP11.7□□□□□ -0.54
SMAD4-211ENST00000590499 SFMBT1Q9UHJ3 866 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 AGO1Q9UL18 857 aaKnown RBP11.7□□□□□ -0.54
SMAD4-211ENST00000590499 ZNF510Q9Y2H8 683 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 HBS1LQ9Y450 684 aaKnown RBP11.7□□□□□ -0.54
SMAD4-211ENST00000590499 DCHS1Q96JQ0 3298 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 E5RJQ4 531 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 PES1O00541 588 aaKnown RBP11.69□□□□□ -0.54
SMAD4-211ENST00000590499 TRIM24O15164 1050 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 EPHB6O15197 1021 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 MSI1O43347 362 aaKnown RBP11.69□□□□□ -0.54
SMAD4-211ENST00000590499 PENKP01210 267 aaPredicted RBP11.69□□□□□ -0.54
SMAD4-211ENST00000590499 APODP05090 189 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 TYRP14679 529 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 GRIA2P42262 883 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 KIR2DL1P43626 348 aaPredicted RBP11.69□□□□□ -0.54
SMAD4-211ENST00000590499 KLK7P49862 253 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 COPB1P53618 953 aaKnown RBP11.69□□□□□ -0.54
SMAD4-211ENST00000590499 NRLP54845 237 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 KDSRQ06136 332 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 RAPGEF1Q13905 1077 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 ANO4Q32M45 955 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 CAVIN1Q6NZI2 390 aaKnown RBP11.69□□□□□ -0.54
SMAD4-211ENST00000590499 SYT13Q7L8C5 426 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 CPXM2Q8N436 756 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 NAT16Q8N8M0 369 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 TERB1Q8NA31 727 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 CCDC26Q8TAB7 109 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 RNF139Q8WU17 664 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 ATRIPQ8WXE1 791 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 ACDQ96AP0 544 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 PIWIL1Q96J94 861 aaKnown RBP11.69□□□□□ -0.54
SMAD4-211ENST00000590499 CPXM1Q96SM3 734 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 BPIFA3Q9BQP9 254 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 FUCA2Q9BTY2 467 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 BBS2Q9BXC9 721 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 MIS12Q9H081 205 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 POLMQ9NP87 494 aaPredicted RBP11.69□□□□□ -0.54
SMAD4-211ENST00000590499 ST7Q9NRC1 585 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 WDR35Q9P2L0 1181 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 TJP2Q9UDY2 1190 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 STOML2Q9UJZ1 356 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 FBXO10Q9UK96 956 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 HCN2Q9UL51 889 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 SIK3Q9Y2K2 1263 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 CEP250Q9BV73 2442 aa11.69□□□□□ -0.54
SMAD4-211ENST00000590499 CCDC163A0A0D9SF12 145 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 LGALS16A8MUM7 142 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 NEDD8-MDP1E9PL57 170 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 F8VZ95 297 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 SART1O43290 800 aaKnown RBP11.68□□□□□ -0.54
SMAD4-211ENST00000590499 LMNAP02545 664 aaKnown RBP11.68□□□□□ -0.54
SMAD4-211ENST00000590499 CISD3P0C7P0 127 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 CDH5P33151 784 aaPredicted RBP11.68□□□□□ -0.54
SMAD4-211ENST00000590499 TNFRSF4P43489 277 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 FNTBP49356 437 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 SEC13P55735 322 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 JAM2P57087 298 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 MRPS21P82921 87 aaKnown RBP11.68□□□□□ -0.54
SMAD4-211ENST00000590499 DMC1Q14565 340 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 KLHL40Q2TBA0 621 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 ANO6Q4KMQ2 910 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 FYB2Q5VWT5 728 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 TPGS1Q6ZTW0 290 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 WDR5BQ86VZ2 330 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 LONP2Q86WA8 852 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 DENND1CQ8IV53 801 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 AOPEPQ8N6M6 819 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 C1orf131Q8NDD1 294 aaKnown RBP11.68□□□□□ -0.54
SMAD4-211ENST00000590499 DQX1Q8TE96 717 aaKnown RBP11.68□□□□□ -0.54
SMAD4-211ENST00000590499 DDX1Q92499 740 aaKnown RBP11.68□□□□□ -0.54
SMAD4-211ENST00000590499 STK33Q9BYT3 514 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 DNAJC17Q9NVM6 304 aaKnown RBP11.68□□□□□ -0.54
SMAD4-211ENST00000590499 DEC1Q9P2X7 70 aa11.68□□□□□ -0.54
SMAD4-211ENST00000590499 LAMA1P25391 3075 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 ADAM23O75077 832 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 LATS1O95835 1130 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 IGLV3-25P01717 112 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 ATP1A3P13637 1013 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 HNRNPLP14866 589 aaKnown RBP eCLIP11.67□□□□□ -0.546e-10■■■□□ 17.8
SMAD4-211ENST00000590499 CYP11B1P15538 503 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 CHKAP35790 457 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 PTGIRP43119 386 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 BPIFB4P59827 614 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 RING1Q06587 406 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 EIF4EBP2Q13542 120 aaPredicted RBP11.67□□□□□ -0.54
SMAD4-211ENST00000590499 HSF5Q4G112 596 aaPredicted RBP11.67□□□□□ -0.54
SMAD4-211ENST00000590499 PTPN20Q4JDL3 420 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 C2orf27AQ580R0 203 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 EMC10Q5UCC4 262 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 SYPL2Q5VXT5 272 aa11.67□□□□□ -0.54
SMAD4-211ENST00000590499 RNF43Q68DV7 783 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms