RNA–Protein interactions for RNA: ENST00000574322.5

CTDNEP1-210, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-210ENST00000574322 NR1D1P20393 614 aa29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 WDR5P61964 334 aaKnown RBP29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 PDK1Q15118 436 aa29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 PRKD1Q15139 912 aaPredicted RBP29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 TUBB8Q3ZCM7 444 aa29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 PDZD4Q76G19 769 aaPredicted RBP29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 HERVK_113Q902F9 699 aa29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 TOP1MTQ969P6 601 aa29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 SERPINB12Q96P63 405 aa29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 HAPLN3Q96S86 360 aa29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 EPAS1Q99814 870 aa29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 CENPHQ9H3R5 247 aa29.36■■■□□ 2.29
CTDNEP1-210ENST00000574322 ZNF638Q14966 1978 aaKnown RBP29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 MAP3K6O95382 1288 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 VNN2O95498 520 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 PBX3P40426 434 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 GPR15P49685 360 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 PGFP49763 221 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 TPI1P60174 286 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 PPP2R5DQ14738 602 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 TAS1R1Q7RTX1 841 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 C9orf72Q96LT7 481 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 PGLYRP2Q96PD5 576 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 MTIF3Q9H2K0 278 aaKnown RBP29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 OR12D3Q9UGF7 316 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 PDE4DIPQ5VU43 2346 aa29.35■■■□□ 2.29
CTDNEP1-210ENST00000574322 A0A1W2PQH9 124 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 SHOX2O60902 331 aaPredicted RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 RTN3O95197 1032 aaPredicted RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 HAPLN1P10915 354 aaPredicted RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 CPB1P15086 417 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 ERCC2P18074 760 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 HTR7P34969 479 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 GLUD2P49448 558 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 BASP1P80723 227 aaKnown RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 HEATR6Q6AI08 1181 aaKnown RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 PPP1R21Q6ZMI0 780 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 ZNF689Q96CS4 500 aaPredicted RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 CEP295NLQ96MC4 621 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 CXXC1Q9P0U4 656 aaPredicted RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 XPO7Q9UIA9 1087 aaKnown RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 BACE2Q9Y5Z0 518 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 TCRBV7S3A2A0A539 114 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 UPP2O95045 317 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 IFRD2Q12894 506 aaPredicted RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 STAT4Q14765 748 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 USP41Q3LFD5 358 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 C9orf50Q5SZB4 431 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 SLC8B1Q6J4K2 584 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 ARFGAP2Q8N6H7 521 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 UHMK1Q8TAS1 419 aaKnown RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 HTR3CQ8WXA8 447 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 IGSF21Q96ID5 467 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 KLC2Q9H0B6 622 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 MTRRQ9UBK8 725 aa29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 NOVA2Q9UNW9 492 aaKnown RBP29.34■■■□□ 2.29
CTDNEP1-210ENST00000574322 NCAM2O15394 837 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 AGTP01019 485 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 CCR1P32246 355 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 PDIA2Q13087 525 aaKnown RBP29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 SDHAF4Q5VUM1 108 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 RNF19BQ6ZMZ0 732 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 DENND5BQ6ZUT9 1274 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 TTC9BQ8N6N2 239 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 CASP10Q92851 521 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 STMN4Q9H169 189 aaPredicted RBP29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 RC3H2Q9HBD1 1191 aaKnown RBP29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 RAB6BQ9NRW1 208 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 OSER1Q9NX31 292 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 CLIC5Q9NZA1 410 aa29.33■■■□□ 2.29
CTDNEP1-210ENST00000574322 PPP1R12AO14974 1030 aaPredicted RBP29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 TSHRP16473 764 aa29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 PSEN1P49768 467 aa29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 USP46P62068 366 aa29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 DEFB103AP81534 67 aa29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 AUHQ13825 339 aaKnown RBP29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 PDIK1LQ8N165 341 aa29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 EPS8L3Q8TE67 593 aaKnown RBP29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 RNF34Q969K3 372 aa29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 SERPINB11Q96P15 392 aa29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 CCDC77Q9BR77 488 aa29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 BRD8Q9H0E9 1235 aa29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 BCCIPQ9P287 314 aaKnown RBP eCLIP29.32■■■□□ 2.28
CTDNEP1-210ENST00000574322 GREB1Q4ZG55 1949 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 A0A087WUV0 522 aaPredicted RBP29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 RGS16O15492 202 aaPredicted RBP29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 LRIG2O94898 1065 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 GAD2Q05329 585 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 SHHQ15465 462 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 FNBP1LQ5T0N5 605 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 ZBED8Q8IZ13 594 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 CCDC110Q8TBZ0 833 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 FERMT1Q9BQL6 677 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 SLC4A7Q9Y6M7 1214 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 KCNU1A8MYU2 1149 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 VAV1P15498 845 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 YWHAQP27348 245 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 HOXC13P31276 330 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 ARPP19P56211 112 aa29.31■■■□□ 2.28
CTDNEP1-210ENST00000574322 RPL10AP62906 217 aaKnown RBP29.31■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms