RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 EIF4HQ15056 248 aaKnown RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 FAM133BQ5BKY9 247 aaKnown RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 ZNF658Q5TYW1 1059 aaPredicted RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 DCAF12L1Q5VU92 463 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 BSPRYQ5W0U4 402 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 PMF1Q6P1K2 205 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 MSANTD2Q6P1R3 559 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 DBX2Q6ZNG2 339 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 TADA2BQ86TJ2 420 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 SLCO6A1Q86UG4 719 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 ADIPOR2Q86V24 386 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 SCML4Q8N228 414 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 CHCHD4Q8N4Q1 142 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 ZCCHC9Q8N567 271 aaKnown RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 ZNF366Q8N895 744 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS53-213ENST00000572334 UBA3Q8TBC4 463 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 BAHD1Q8TBE0 780 aaPredicted RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 CLEC4CQ8WTT0 213 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 SLC35F5Q8WV83 523 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 KCTD13Q8WZ19 329 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 EDEM1Q92611 657 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 KAT5Q92993 513 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 PLD4Q96BZ4 506 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 MYO19Q96H55 970 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 ORAI3Q9BRQ5 295 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 GPR174Q9BXC1 333 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 SLC2A11Q9BYW1 496 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 GTPBP4Q9BZE4 634 aaKnown RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 SCAND2PQ9GZW5 306 aaPredicted RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 RRAGDQ9NQL2 400 aaPredicted RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 TOR4AQ9NXH8 423 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 NFE2L3Q9Y4A8 694 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 FARP1Q9Y4F1 1045 aaPredicted RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 IGSF10Q6WRI0 2623 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 A0A1B0GTW7 788 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 GOLGA6L7A0A1B0GV03 622 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 PIK3R2O00459 728 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 DYNC1I1O14576 645 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 PMM2O15305 246 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 SLC16A3O15427 465 aaKnown RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 NDUFS2O75306 463 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 DKK1O94907 266 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 SYPP08247 313 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 EPB41P11171 864 aaKnown RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 VDRP11473 427 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 BMP6P22004 513 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 CD70P32970 193 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 ACSL1P33121 698 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 RPL34P49207 117 aaKnown RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 BCAT1P54687 386 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 BST2Q10589 180 aaKnown RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 LRMPQ12912 555 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 SLC14A1Q13336 389 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 STARD3Q14849 445 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 PLEKHG6Q3KR16 790 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 SGO2Q562F6 1265 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 DCAF17Q5H9S7 520 aaPredicted RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 NADSYN1Q6IA69 706 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 LCLAT1Q6UWP7 414 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 RABEPKQ7Z6M1 372 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 GLRX5Q86SX6 157 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 CACUL1Q86Y37 369 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 RGL4Q8IZJ4 473 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 ARHGAP18Q8N392 663 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 HDDC3Q8N4P3 179 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 TTC39CQ8N584 583 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 CCDC150Q8NCX0 1101 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 CADM4Q8NFZ8 388 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 DDI1Q8WTU0 396 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 CYB5D2Q8WUJ1 264 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 ADAMTS14Q8WXS8 1223 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 FOXJ1Q92949 421 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 CCDC47Q96A33 483 aaKnown RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 SIPA1Q96FS4 1042 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 GBP4Q96PP9 640 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 MTG2Q9H4K7 406 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 SLC32A1Q9H598 525 aa7.01□□□□□ -1.29
VPS53-213ENST00000572334 C6orf106Q9H6K1 298 aaPredicted RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 EIF2B4Q9UI10 523 aaKnown RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 INTS6Q9UL03 887 aaKnown RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 FNDC3AQ9Y2H6 1198 aaKnown RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 HBS1LQ9Y450 684 aaKnown RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 COL5A1P20908 1838 aaPredicted RBP7.01□□□□□ -1.29
VPS53-213ENST00000572334 CHD5Q8TDI0 1954 aa7□□□□□ -1.29
VPS53-213ENST00000572334 SHROOM3Q8TF72 1996 aa7□□□□□ -1.29
VPS53-213ENST00000572334 BPTFQ12830 3046 aa7□□□□□ -1.29
VPS53-213ENST00000572334 TMEM8BA6NDV4 472 aa7□□□□□ -1.29
VPS53-213ENST00000572334 TIMM44O43615 452 aa7□□□□□ -1.29
VPS53-213ENST00000572334 STX10O60499 249 aa7□□□□□ -1.29
VPS53-213ENST00000572334 LETM1O95202 739 aaPredicted RBP7□□□□□ -1.29
VPS53-213ENST00000572334 LATS1O95835 1130 aa7□□□□□ -1.29
VPS53-213ENST00000572334 EPHX1P07099 455 aa7□□□□□ -1.29
VPS53-213ENST00000572334 FTH1P19P0C7X4 201 aa7□□□□□ -1.29
VPS53-213ENST00000572334 ZNF883P0CG24 379 aa7□□□□□ -1.29
VPS53-213ENST00000572334 SETSIPP0DME0 302 aa7□□□□□ -1.29
VPS53-213ENST00000572334 LCP1P13796 627 aa7□□□□□ -1.29
VPS53-213ENST00000572334 TRIM21P19474 475 aaKnown RBP7□□□□□ -1.29
VPS53-213ENST00000572334 BRD2P25440 801 aaKnown RBP7□□□□□ -1.29
VPS53-213ENST00000572334 FMO5P49326 533 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms