RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 NCAPGQ9BPX3 1015 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 FAM204AQ9H8W3 233 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 METTL5Q9NRN9 209 aaKnown RBP21.41■■□□□ 1.02
VPS53-210ENST00000571456 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.41■■□□□ 1.02
VPS53-210ENST00000571456 DUS2Q9NX74 493 aaKnown RBP21.41■■□□□ 1.02
VPS53-210ENST00000571456 INTUQ9ULD6 942 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 IGF2RP11717 2491 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 NCAM2O15394 837 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 IRAK2O43187 625 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 RETP07949 1114 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 RRM1P23921 792 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 CHKAP35790 457 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 ZXDBP98169 803 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 EIF4EBP2Q13542 120 aaPredicted RBP21.4■■□□□ 1.02
VPS53-210ENST00000571456 PPP2R5DQ14738 602 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 C2CD6Q53TS8 623 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 DCUN1D2Q6PH85 259 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 CPA6Q8N4T0 437 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 CSGALNACT1Q8TDX6 532 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 FNIP1Q8TF40 1166 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 EXOC4Q96A65 974 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 ZNF653Q96CK0 615 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 LRRC3BQ96PB8 259 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 DDX50Q9BQ39 737 aaKnown RBP21.4■■□□□ 1.02
VPS53-210ENST00000571456 GKN1Q9NS71 199 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 CNOT8Q9UFF9 292 aaKnown RBP21.4■■□□□ 1.02
VPS53-210ENST00000571456 SFMBT1Q9UHJ3 866 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 SLC12A6Q9UHW9 1150 aa21.4■■□□□ 1.02
VPS53-210ENST00000571456 C2CD4BA6NLJ0 364 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 MDM4O15151 490 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 NRDCO43847 1150 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 GRAP2O75791 330 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 LCA5LO95447 670 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 APOEP02649 317 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 H2AFZP0C0S5 128 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 CCR1P32246 355 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 SLC11A2P49281 568 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 RNASE9P60153 205 aaKnown RBP21.39■■□□□ 1.01
VPS53-210ENST00000571456 GFPT1Q06210 699 aaPredicted RBP21.39■■□□□ 1.01
VPS53-210ENST00000571456 GRM2Q14416 872 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 BRMS1LQ5PSV4 323 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 PPP1R15BQ5SWA1 713 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 Q6ZNB5 142 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 H2AFVQ71UI9 128 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 STRADAQ7RTN6 431 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 TAC4Q86UU9 113 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 SPC24Q8NBT2 197 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 CTNNBL1Q8WYA6 563 aaPredicted RBP21.39■■□□□ 1.01
VPS53-210ENST00000571456 SLC39A13Q96H72 371 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 BAG1Q99933 345 aaPredicted RBP21.39■■□□□ 1.01
VPS53-210ENST00000571456 C8orf33Q9H7E9 229 aaPredicted RBP21.39■■□□□ 1.01
VPS53-210ENST00000571456 SEMA4GQ9NTN9 838 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 STOML2Q9UJZ1 356 aa21.39■■□□□ 1.01
VPS53-210ENST00000571456 M0QYT0 321 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 ARNTLO00327 626 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 ENDOD1O94919 500 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 PDGFRAP16234 1089 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 GPD1P21695 349 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 TARSP26639 723 aaKnown RBP21.38■■□□□ 1.01
VPS53-210ENST00000571456 FLT3P36888 993 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 NRLP54845 237 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 MAMLD1Q13495 774 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 SPA17Q15506 151 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 EML3Q32P44 896 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 ITPRIPL2Q3MIP1 535 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 PRR23CQ6ZRP0 262 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 TXLNBQ8N3L3 684 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 CPXM2Q8N436 756 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 CCDC112Q8NEF3 446 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 DDIT4Q9NX09 232 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 SDK1Q7Z5N4 2213 aa21.38■■□□□ 1.01
VPS53-210ENST00000571456 EIF3CLB5ME19 914 aaKnown RBP21.37■■□□□ 1.01
VPS53-210ENST00000571456 GREM1O60565 184 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 ADH1CP00326 375 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 PROS1P07225 676 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 IRF1P10914 325 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 CORO1AP31146 461 aaKnown RBP21.37■■□□□ 1.01
VPS53-210ENST00000571456 RFC1P35251 1148 aaPredicted RBP21.37■■□□□ 1.01
VPS53-210ENST00000571456 SULT1E1P49888 294 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 ZNF143P52747 638 aaPredicted RBP21.37■■□□□ 1.01
VPS53-210ENST00000571456 MTAPQ13126 283 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 RUNX3Q13761 415 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 CSRP2Q16527 193 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 N4BP2L1Q5TBK1 243 aaPredicted RBP21.37■■□□□ 1.01
VPS53-210ENST00000571456 BNIPLQ7Z465 357 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 ATP6V0D2Q8N8Y2 350 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 RXFP2Q8WXD0 754 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 BTN2A3PQ96KV6 586 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 EIF3CQ99613 913 aaKnown RBP21.37■■□□□ 1.01
VPS53-210ENST00000571456 CNPY3Q9BT09 278 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 UVRAGQ9P2Y5 699 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 SETXQ7Z333 2677 aaKnown RBP21.37■■□□□ 1.01
VPS53-210ENST00000571456 TICRRQ7Z2Z1 1910 aa21.37■■□□□ 1.01
VPS53-210ENST00000571456 GDF9O60383 454 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 CYP1A2P05177 515 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 TMEM253P0C7T8 217 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 ABCB4P21439 1286 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 RDXP35241 583 aaKnown RBP21.36■■□□□ 1.01
VPS53-210ENST00000571456 CXCR3P49682 368 aa21.36■■□□□ 1.01
VPS53-210ENST00000571456 GALCP54803 685 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms