RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 GRIK1P39086 918 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 GDF10P55107 478 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 BASP1P80723 227 aaKnown RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 CDK16Q00536 496 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 NME3Q13232 169 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 NAA25Q14CX7 972 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 KYNUQ16719 465 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 ACBD5Q5T8D3 534 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 SYPL2Q5VXT5 272 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 BSPRYQ5W0U4 402 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 NCBP2-AS2Q69YL0 99 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 NPNTQ6UXI9 565 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 RFX8Q6ZV50 586 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 GPRIN1Q7Z2K8 1008 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 TRPM8Q7Z2W7 1104 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 VPS52Q8N1B4 723 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 GLIS1Q8NBF1 620 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 ATXN2LQ8WWM7 1075 aaKnown RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 GRAMD1AQ96CP6 724 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 LRRC39Q96DD0 335 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 OLFM3Q96PB7 478 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 USP29Q9HBJ7 922 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 WDR6Q9NNW5 1121 aaKnown RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 ARHGEF4Q9NR80 690 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 PIGVQ9NUD9 493 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 NOVA2Q9UNW9 492 aaKnown RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 COL4A4P53420 1690 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 PQBP1O60828 265 aaKnown RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 RTN3O95197 1032 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 SHBGP04278 402 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 FYNP06241 537 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 ETS1P14921 441 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 MX2P20592 715 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 FDFT1P37268 417 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 SLC5A3P53794 718 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 CACNA2D1P54289 1103 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 TPI1P60174 286 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 MRPL58Q14197 206 aaKnown RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 RBBP5Q15291 538 aaKnown RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 CTXN3Q4LDR2 81 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 SLC39A12Q504Y0 691 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 SPDYAQ5MJ70 313 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 VARS2Q5ST30 1063 aaKnown RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 BTBD8Q5XKL5 378 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 SLC39A5Q6ZMH5 540 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 HFE2Q6ZVN8 426 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 ANKS3Q6ZW76 656 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 BHLHA9Q7RTU4 235 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 LRRTM3Q86VH5 581 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 TDRPQ86YL5 185 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 SPPL2BQ8TCT7 592 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 SMOC2Q9H3U7 446 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 RABEP2Q9H5N1 569 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 WDCPQ9H6R7 721 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 LGALS13Q9UHV8 139 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 XPO7Q9UIA9 1087 aaKnown RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 PRG3Q9Y2Y8 225 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-229ENST00000557348 ACTL7BQ9Y614 415 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 TLDC2A0PJX2 215 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 OPHN1O60890 802 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 DGKIO75912 1065 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 GSTA2P09210 222 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 SLC2A3P11169 496 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 GOT1P17174 413 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 FGFR3P22607 806 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 GLUD2P49448 558 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 ATXN1P54253 815 aaKnown RBP13.04□□□□□ -0.32
SHMT2-229ENST00000557348 MAGOHP61326 146 aaKnown RBP13.04□□□□□ -0.32
SHMT2-229ENST00000557348 YWHAGP61981 247 aaKnown RBP eCLIP13.04□□□□□ -0.32
SHMT2-229ENST00000557348 ZNF33AQ06730 810 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 CCDC15Q0P6D6 951 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 PDIA2Q13087 525 aaKnown RBP13.04□□□□□ -0.32
SHMT2-229ENST00000557348 SEMA3BQ13214 749 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 DPYSQ14117 519 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 KCNJ11Q14654 390 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 TNFAIP8L3Q5GJ75 292 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 MON1AQ86VX9 555 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 ANKLE1Q8NAG6 615 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 MCUQ8NE86 351 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 PYROXD1Q8WU10 500 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 RAB3IPQ96QF0 476 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-229ENST00000557348 ADAM33Q9BZ11 813 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 CRISPLD2Q9H0B8 497 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 OSBPL2Q9H1P3 480 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 OLA1Q9NTK5 396 aaKnown RBP13.04□□□□□ -0.32
SHMT2-229ENST00000557348 TMEM30AQ9NV96 361 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 TMLHEQ9NVH6 421 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 DTLQ9NZJ0 730 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 SENP1Q9P0U3 644 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 SLC24A2Q9UI40 661 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 SCML2Q9UQR0 700 aa13.04□□□□□ -0.32
SHMT2-229ENST00000557348 TNFRSF10BO14763 440 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 AHCYL1O43865 530 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 EFCAB14O75071 495 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 SUN1O94901 812 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 IGLV3-25P01717 112 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 TPSB2P20231 275 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 RBL1P28749 1068 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 CCR1P32246 355 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms