RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 PPP1R21Q6ZMI0 780 aa15.2■□□□□ 0.02
VPS33B-205ENST00000556096 FAM72BQ86X60 149 aa15.2■□□□□ 0.02
VPS33B-205ENST00000556096 C9orf72Q96LT7 481 aa15.2■□□□□ 0.02
VPS33B-205ENST00000556096 CCDC77Q9BR77 488 aa15.2■□□□□ 0.02
VPS33B-205ENST00000556096 STMN4Q9H169 189 aaPredicted RBP15.2■□□□□ 0.02
VPS33B-205ENST00000556096 XPO7Q9UIA9 1087 aaKnown RBP15.2■□□□□ 0.02
VPS33B-205ENST00000556096 TLDC2A0PJX2 215 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 RGS16O15492 202 aaPredicted RBP15.19■□□□□ 0.02
VPS33B-205ENST00000556096 MFSD11O43934 449 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 SHOX2O60902 331 aaPredicted RBP15.19■□□□□ 0.02
VPS33B-205ENST00000556096 MAP3K6O95382 1288 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 AGTP01019 485 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 AMHP03971 560 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 ERCC2P18074 760 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 LMAN1P49257 510 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 ALDH7A1P49419 539 aaKnown RBP15.19■□□□□ 0.02
VPS33B-205ENST00000556096 NRLP54845 237 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 TPI1P60174 286 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 WDR5P61964 334 aaKnown RBP15.19■□□□□ 0.02
VPS33B-205ENST00000556096 PDK1Q15118 436 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 RTP2Q5QGT7 225 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 HEATR6Q6AI08 1181 aaKnown RBP15.19■□□□□ 0.02
VPS33B-205ENST00000556096 ATAD1Q8NBU5 361 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 SPATA17Q96L03 361 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 B3GALT6Q96L58 329 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 PGLYRP2Q96PD5 576 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 HAPLN3Q96S86 360 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 EPAS1Q99814 870 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 FERMT1Q9BQL6 677 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 KLC2Q9H0B6 622 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 CWH43Q9H720 699 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 NMUR1Q9HB89 426 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 OR12D3Q9UGF7 316 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 MFHAS1Q9Y4C4 1052 aa15.19■□□□□ 0.02
VPS33B-205ENST00000556096 A0A087WUV0 522 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 A0A1W2PQH9 124 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 TCRBV7S3A2A0A539 114 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 MTMR11A4FU01 709 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 PPP1R12AO14974 1030 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 EFCAB14O75071 495 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 TMEM63AO94886 807 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 RTN3O95197 1032 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 IVLP07476 585 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 CPB1P15086 417 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 TSHRP16473 764 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 HTR7P34969 479 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 GLUD2P49448 558 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 GPR15P49685 360 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 IFRD2Q12894 506 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 PDIA2Q13087 525 aaKnown RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 AUHQ13825 339 aaKnown RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 PPP2R5DQ14738 602 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 PRKD1Q15139 912 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 MSANTD2Q6P1R3 559 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 TAS1R1Q7RTX1 841 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 TMEM173Q86WV6 379 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 RNF168Q8IYW5 571 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 PDIK1LQ8N165 341 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 EPS8L3Q8TE67 593 aaKnown RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 BCL7CQ8WUZ0 217 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-205ENST00000556096 HTR3CQ8WXA8 447 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 RNF34Q969K3 372 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 TOP1MTQ969P6 601 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 CAPS2Q9BXY5 557 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 RAB6BQ9NRW1 208 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 KIAA1671Q9BY89 1806 aa15.18■□□□□ 0.02
VPS33B-205ENST00000556096 GRXCR1A8MXD5 290 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 GOLGA8MH3BSY2 632 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 NCAM2O15394 837 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 HAPLN1P10915 354 aaPredicted RBP15.17■□□□□ 0.02
VPS33B-205ENST00000556096 CCR1P32246 355 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 PBX3P40426 434 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 PGFP49763 221 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 MAGOHP61326 146 aaKnown RBP15.17■□□□□ 0.02
VPS33B-205ENST00000556096 GAD2Q05329 585 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 FNBP1LQ5T0N5 605 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 FAM109BQ6ICB4 259 aaPredicted RBP15.17■□□□□ 0.02
VPS33B-205ENST00000556096 RSPO2Q6UXX9 243 aaPredicted RBP15.17■□□□□ 0.02
VPS33B-205ENST00000556096 RNF19BQ6ZMZ0 732 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 ZBED8Q8IZ13 594 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 CCDC110Q8TBZ0 833 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 CASP10Q92851 521 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 CEP295NLQ96MC4 621 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 BRD8Q9H0E9 1235 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 COLQQ9Y215 455 aaPredicted RBP15.17■□□□□ 0.02
VPS33B-205ENST00000556096 BACE2Q9Y5Z0 518 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 PLXNA3P51805 1871 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 E7EVH7 732 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 BAIAP3O94812 1187 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 VNN2O95498 520 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 YWHAQP27348 245 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 ARPP19P56211 112 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 PPP2R2AP63151 447 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 FASTKD3Q14CZ7 662 aaKnown RBP15.17■□□□□ 0.02
VPS33B-205ENST00000556096 USP41Q3LFD5 358 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 DNAJC21Q5F1R6 531 aaKnown RBP15.17■□□□□ 0.02
VPS33B-205ENST00000556096 SDHAF4Q5VUM1 108 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 SLC8B1Q6J4K2 584 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 DENND5BQ6ZUT9 1274 aa15.17■□□□□ 0.02
VPS33B-205ENST00000556096 MCUQ8NE86 351 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms