RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 DPP6P42658 865 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 GABRB2P47870 512 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 RAPGEF1Q13905 1077 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 CKAP5Q14008 2032 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 STARD3Q14849 445 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 PTPN20Q4JDL3 420 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 TMEM215Q68D42 235 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 KIAA1211LQ6NV74 962 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 SLC36A4Q6YBV0 504 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 AHI1Q8N157 1196 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 TMEM35BQ8NCS4 154 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 LMLNQ96KR4 655 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 BTN2A3PQ96KV6 586 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 PRICKLE1Q96MT3 831 aaPredicted RBP16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 RTKNQ9BST9 563 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 LSM14BQ9BX40 385 aaKnown RBP16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 FANCLQ9NW38 375 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 CACNA2D2Q9NY47 1150 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 RRN3Q9NYV6 651 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 CALCOCO1Q9P1Z2 691 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 TJP2Q9UDY2 1190 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 LAMA1P25391 3075 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 LGALS16A8MUM7 142 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 PES1O00541 588 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 ZBTB24O43167 697 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 DAB1O75553 588 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 APOEP02649 317 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 PNMA6AP0CW24 399 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 NDUFV2P19404 249 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 BCKDHBP21953 392 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 HOXD12P35452 270 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 JAM2P57087 298 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 CDK17Q00537 523 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 ZNF234Q14588 700 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 RSPO4Q2I0M5 234 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 MS4A13Q5J8X5 152 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 FKBP15Q5T1M5 1219 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 PEAR1Q5VY43 1037 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 LPCAT2Q7L5N7 544 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 ADIPOR2Q86V24 386 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 ZNF677Q86XU0 584 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 PASD1Q8IV76 773 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 ANKRD20A12PQ8NF67 263 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 FIBINQ8TAL6 211 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 EPS8L1Q8TE68 723 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 MRGPRX1Q96LB2 322 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 MBD1Q9UIS9 605 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 GGA2Q9UJY4 613 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 CDV3Q9UKY7 258 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 SIK3Q9Y2K2 1263 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 RALGAPA1Q6GYQ0 2036 aa16.65■□□□□ 0.26
CCDC88C-209ENST00000554872 TNRC6BQ9UPQ9 1833 aaKnown RBP16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 TYW5A2RUC4 315 aaKnown RBP16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 KCNU1A8MYU2 1149 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 SLC30A4O14863 429 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 TSPAN3O60637 253 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 ERBB2P04626 1255 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 PABPC1P11940 636 aaKnown RBP16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 GBP1P32455 592 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 IL12RB1P42701 662 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 SGSHP51688 502 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 SLC6A3Q01959 620 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 NCAPHQ15003 741 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 TAF5Q15542 800 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 DCAF6Q58WW2 860 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 TTC39BQ5VTQ0 682 aaPredicted RBP16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 FAM183BPQ6ZVS7 135 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 ARCQ7LC44 396 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 APTXQ7Z2E3 356 aaKnown RBP16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 KDM1BQ8NB78 822 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 NT5C3BQ969T7 300 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 PGAP3Q96FM1 320 aaPredicted RBP16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 BPIFA3Q9BQP9 254 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 VPS16Q9H269 839 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 HSD3B7Q9H2F3 369 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 TMEM245Q9H330 911 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 FBRSQ9HAH7 460 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 ABCB8Q9NUT2 735 aa16.64■□□□□ 0.25
CCDC88C-209ENST00000554872 IGHV1OR15-9A0A0B4J2B8 117 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 TBL1XO60907 577 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 IGLV3-19P01714 112 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 CCR1P32246 355 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 NOS2P35228 1153 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 WASP42768 502 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 COPB1P53618 953 aaKnown RBP16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 CAMK2GQ13555 558 aaPredicted RBP16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 ARID5BQ14865 1188 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 FUT11Q495W5 492 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 RFWD3Q6PCD5 774 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 NOP9Q86U38 636 aaKnown RBP16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 DEFB106AQ8N104 65 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 ATP6V0D2Q8N8Y2 350 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 ADAM32Q8TC27 787 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 TTC17Q96AE7 1141 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 ERGIC2Q96RQ1 377 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 PRMT1Q99873 361 aaKnown RBP16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 CIPCQ9C0C6 399 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 NUCKS1Q9H1E3 243 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms