RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 TEX264Q9Y6I9 313 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 NCAM2O15394 837 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 IRAK2O43187 625 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 SPAG6O75602 509 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 SLC11A1P49279 550 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 GATMP50440 423 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 ELAVL2Q12926 359 aaKnown RBP27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 SEMA5AQ13591 1074 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 C3orf62Q6ZUJ4 267 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 CYP4X1Q8N118 509 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 XPO6Q96QU8 1125 aaKnown RBP27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 BRD8Q9H0E9 1235 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 RNF208Q9H0X6 261 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 SMOC2Q9H3U7 446 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 ARHGEF38Q9NXL2 777 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 SCML2Q9UQR0 700 aa27.17■■□□□ 1.94
CCDC88C-205ENST00000553403 LOC101059915A0A1B0GWI6 518 aaPredicted RBP27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 METTL18O95568 372 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 KLHL38Q2WGJ6 581 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 ANKRD20A2Q5SQ80 823 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 FAXCQ5TGI0 409 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 ANKRD20A1Q5TYW2 823 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 ANKRD20A3Q5VUR7 823 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 SCD5Q86SK9 330 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 NUP93Q8N1F7 819 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 RNF34Q969K3 372 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 LGMNQ99538 433 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 HIPK3Q9H422 1215 aa27.16■■□□□ 1.94
CCDC88C-205ENST00000553403 OPHN1O60890 802 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 AMHP03971 560 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 APRTP07741 180 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 SSTR1P30872 391 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 ELK3P41970 407 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 HNRNPH2P55795 449 aaKnown RBP27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 SLC39A5Q6ZMH5 540 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 CCDC33Q8N5R6 958 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 LRRC39Q96DD0 335 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 GPR62Q9BZJ7 368 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 FBXO44Q9H4M3 255 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 PRDM12Q9H4Q4 367 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 ACSS3Q9H6R3 686 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 OR12D3Q9UGF7 316 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 TANC1Q9C0D5 1861 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 CENPFP49454 3210 aa27.15■■□□□ 1.94
CCDC88C-205ENST00000553403 GMNCA6NCL1 334 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 POC1B-GALNT4F8VUJ3 575 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 EN2P19622 333 aaPredicted RBP27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 GEMIN4P57678 1058 aaKnown RBP27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 FUT10Q6P4F1 479 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 CAPN12Q6ZSI9 719 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 NLRP14Q86W24 1093 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 CEP57Q86XR8 500 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 ARHGAP18Q8N392 663 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 ATXN2LQ8WWM7 1075 aaKnown RBP27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 P2RY11Q96G91 374 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 HAPLN3Q96S86 360 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 OXCT2Q9BYC2 517 aaPredicted RBP27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 PPANQ9NQ55 473 aaKnown RBP27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 INTS9Q9NV88 658 aaKnown RBP27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 TBK1Q9UHD2 729 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 CHMP2BQ9UQN3 213 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 TTC3P53804 2025 aa27.14■■□□□ 1.94
CCDC88C-205ENST00000553403 HTR7P34969 479 aa27.14■■□□□ 1.93
CCDC88C-205ENST00000553403 CDK16Q00536 496 aa27.14■■□□□ 1.93
CCDC88C-205ENST00000553403 AP1B1Q10567 949 aa27.14■■□□□ 1.93
CCDC88C-205ENST00000553403 SMARCB1Q12824 385 aa27.14■■□□□ 1.93
CCDC88C-205ENST00000553403 TMED2Q15363 201 aa27.14■■□□□ 1.93
CCDC88C-205ENST00000553403 CAND1Q86VP6 1230 aaKnown RBP27.14■■□□□ 1.93
CCDC88C-205ENST00000553403 MON1AQ86VX9 555 aa27.14■■□□□ 1.93
CCDC88C-205ENST00000553403 SCLYQ96I15 445 aa27.14■■□□□ 1.93
CCDC88C-205ENST00000553403 IL37Q9NZH6 218 aa27.14■■□□□ 1.93
CCDC88C-205ENST00000553403 PSMC3IPQ9P2W1 217 aaPredicted RBP27.14■■□□□ 1.93
CCDC88C-205ENST00000553403 VWA8A3KMH1 1905 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 H7C4K7 107 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 NDUFAB1O14561 156 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 GALTP07902 379 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 MX2P20592 715 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 SERPINB6P35237 376 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 MAGEA3P43357 314 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 IFRD2Q12894 506 aaPredicted RBP27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 IGDCC3Q8IVU1 814 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 CCNYQ8ND76 341 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 FBF1Q8TES7 1133 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 TOX2Q96NM4 488 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 DHRS4Q9BTZ2 278 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 CCDC134Q9H6E4 229 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 XAB2Q9HCS7 855 aaKnown RBP27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 EIF2B3Q9NR50 452 aaKnown RBP27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 SENP1Q9P0U3 644 aa27.13■■□□□ 1.93
CCDC88C-205ENST00000553403 TBKBP1A7MCY6 615 aa27.12■■□□□ 1.93
CCDC88C-205ENST00000553403 RNF103O00237 685 aa27.12■■□□□ 1.93
CCDC88C-205ENST00000553403 LRIG2O94898 1065 aa27.12■■□□□ 1.93
CCDC88C-205ENST00000553403 FAM107AO95990 144 aa27.12■■□□□ 1.93
CCDC88C-205ENST00000553403 SARNPP82979 210 aaKnown RBP27.12■■□□□ 1.93
CCDC88C-205ENST00000553403 PPP2R5DQ14738 602 aa27.12■■□□□ 1.93
CCDC88C-205ENST00000553403 CCT8L2Q96SF2 557 aa27.12■■□□□ 1.93
CCDC88C-205ENST00000553403 A0A1W2PQH9 124 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 TBC1D4O60343 1298 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 GSTA2P09210 222 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 BRAFP15056 766 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms