RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CCDC65Q8IXS2 484 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 SYAP1Q96A49 352 aaPredicted RBP11.03□□□□□ -0.64
VPS29-208ENST00000550267 TMX3Q96JJ7 454 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 TNIP3Q96KP6 325 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 PANK2Q9BZ23 570 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 GZF1Q9H116 711 aaPredicted RBP11.03□□□□□ -0.64
VPS29-208ENST00000550267 FBXO44Q9H4M3 255 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 CYLDQ9NQC7 956 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 CUEDC1Q9NWM3 386 aaPredicted RBP11.03□□□□□ -0.64
VPS29-208ENST00000550267 MYO18AQ92614 2054 aaKnown RBP11.02□□□□□ -0.64
VPS29-208ENST00000550267 A0A1W2PQH9 124 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 NPC1O15118 1278 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 CLIC2O15247 247 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 CYP26A1O43174 497 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 TGFB1I1O43294 461 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 PHACTR2O75167 634 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 STC2O76061 302 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 CLSTN1O94985 981 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 PENKP01210 267 aaPredicted RBP11.02□□□□□ -0.65
VPS29-208ENST00000550267 KLKB1P03952 638 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 EPHX1P07099 455 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 RARGP13631 454 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 ACSL1P33121 698 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 PLA2G4AP47712 749 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 SEMG2Q02383 582 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 TEAD4Q15561 434 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 KCNT1Q5JUK3 1230 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 FYB2Q5VWT5 728 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 LARP1BQ659C4 914 aaKnown RBP11.02□□□□□ -0.65
VPS29-208ENST00000550267 LRRC69Q6ZNQ3 347 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 CCDC73Q6ZRK6 1079 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 STXBP4Q6ZWJ1 553 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 ZNF605Q86T29 641 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 TMPRSS12Q86WS5 348 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 ZNF843Q8N446 348 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 ENGASEQ8NFI3 743 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 SLC2A14Q8TDB8 520 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 UCMAQ8WVF2 138 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 SORCS1Q8WY21 1168 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 IGSF8Q969P0 613 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 JAKMIP2Q96AA8 810 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 NXPE2Q96DL1 559 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 PIWIL1Q96J94 861 aaKnown RBP11.02□□□□□ -0.65
VPS29-208ENST00000550267 FCRL3Q96P31 734 aaPredicted RBP11.02□□□□□ -0.65
VPS29-208ENST00000550267 PCED1AQ9H1Q7 454 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 CSNK1G1Q9HCP0 422 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 AGPAT3Q9NRZ7 376 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 ELOVL2Q9NXB9 296 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 FTSJ1Q9UET6 329 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 SMC3Q9UQE7 1217 aa11.02□□□□□ -0.65
VPS29-208ENST00000550267 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.02□□□□□ -0.65
VPS29-208ENST00000550267 SRPRBQ9Y5M8 271 aaKnown RBP11.02□□□□□ -0.65
VPS29-208ENST00000550267 MUC22E2RYF6 1773 aaPredicted RBP11.02□□□□□ -0.65
VPS29-208ENST00000550267 ASH1LQ9NR48 2969 aaKnown RBP11.01□□□□□ -0.65
VPS29-208ENST00000550267 CBX4O00257 560 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 PCDHGA12O60330 932 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 HMBSP08397 361 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 JUPP14923 745 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 GRIA4P48058 902 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 CASP4P49662 377 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 ZNF699Q32M78 642 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 ZNF667Q5HYK9 610 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 C10orf120Q5SQS8 335 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 TMEM215Q68D42 235 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 KLHDC10Q6PID8 442 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 ANKS1BQ7Z6G8 1248 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 C12orf29Q8N999 325 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 RBBP8NLQ8NC74 664 aaPredicted RBP11.01□□□□□ -0.65
VPS29-208ENST00000550267 ZNF507Q8TCN5 953 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 PLEKHO2Q8TD55 490 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 BIRC7Q96CA5 298 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 CIPCQ9C0C6 399 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 LHX5Q9H2C1 402 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 VRTNQ9H8Y1 702 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 OSGEPQ9NPF4 335 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 ENAMQ9NRM1 1142 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 FAM49BQ9NUQ9 324 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.01□□□□□ -0.65
VPS29-208ENST00000550267 HMGXB4Q9UGU5 601 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 CLEC4EQ9ULY5 219 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 SCML2Q9UQR0 700 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 APC2O95996 2303 aa11.01□□□□□ -0.65
VPS29-208ENST00000550267 HHLA1C9JL84 531 aa11□□□□□ -0.65
VPS29-208ENST00000550267 ENC1O14682 589 aa11□□□□□ -0.65
VPS29-208ENST00000550267 FSBPO95073 299 aa11□□□□□ -0.65
VPS29-208ENST00000550267 FAM200BP0CF97 657 aa11□□□□□ -0.65
VPS29-208ENST00000550267 ADORA2BP29275 332 aa11□□□□□ -0.65
VPS29-208ENST00000550267 CORO1AP31146 461 aaKnown RBP11□□□□□ -0.65
VPS29-208ENST00000550267 CTSKP43235 329 aa11□□□□□ -0.65
VPS29-208ENST00000550267 NDST1P52848 882 aa11□□□□□ -0.65
VPS29-208ENST00000550267 BIRC3Q13489 604 aa11□□□□□ -0.65
VPS29-208ENST00000550267 INAVAQ3KP66 663 aa11□□□□□ -0.65
VPS29-208ENST00000550267 SERPINA13PQ6UXR4 307 aa11□□□□□ -0.65
VPS29-208ENST00000550267 CLEC20AQ6ZU45 233 aa11□□□□□ -0.65
VPS29-208ENST00000550267 EPM2AIP1Q7L775 607 aaPredicted RBP11□□□□□ -0.65
VPS29-208ENST00000550267 SCD5Q86SK9 330 aa11□□□□□ -0.65
VPS29-208ENST00000550267 GATAD2AQ86YP4 633 aa11□□□□□ -0.65
VPS29-208ENST00000550267 NELFCDQ8IXH7 590 aa11□□□□□ -0.65
VPS29-208ENST00000550267 PDILTQ8N807 584 aa11□□□□□ -0.65
VPS29-208ENST00000550267 ZNF366Q8N895 744 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms