RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 NOL9Q5SY16 702 aaKnown RBP8.01□□□□□ -1.13
VPS13D-211ENST00000543710 SEL1L3Q68CR1 1132 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ANGPTL8Q6UXH0 198 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ARCQ7LC44 396 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF438Q7Z4V0 828 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 MYO1HQ8N1T3 1032 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 HERVK_113Q902F9 699 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 NLNQ9BYT8 704 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 STRADBQ9C0K7 418 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 HMG20AQ9NP66 347 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 AGPAT3Q9NRZ7 376 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 FAM153AQ9UHL3 310 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 DERAQ9Y315 318 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 PCDHA11Q9Y5I1 949 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ALOX5P09917 674 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 MYBP10242 640 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ITGB6P18564 788 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 SLC9A1P19634 815 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 OSTNP61366 133 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 SLC34A1Q06495 639 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 BST2Q10589 180 aaKnown RBP8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ITGA7Q13683 1181 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ARMC3Q5W041 872 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 NEK5Q6P3R8 708 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ERP27Q96DN0 273 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ADGRE3Q9BY15 652 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 PCMTD2Q9NV79 361 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 THAP1Q9NVV9 213 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 NDRG2Q9UN36 371 aaKnown RBP8.01□□□□□ -1.13
VPS13D-211ENST00000543710 L1RE1Q9UN81 338 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 TPRKBQ9Y3C4 175 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 PCDHA3Q9Y5H8 950 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 NFASCO94856 1347 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 QSOX1O00391 747 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 CYP2D6P10635 497 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 CLCN2P51788 898 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 PRKCEQ02156 737 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 LRRC74AQ0VAA2 488 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 FAM45BPQ6NSW5 357 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 RAD9BQ6WBX8 426 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 C3orf62Q6ZUJ4 267 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ZCCHC9Q8N567 271 aaKnown RBP8.01□□□□□ -1.13
VPS13D-211ENST00000543710 MYCBPAPQ8TBZ2 947 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 EXT2Q93063 718 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 NR1H4Q96RI1 486 aaPredicted RBP8.01□□□□□ -1.13
VPS13D-211ENST00000543710 FUT8Q9BYC5 575 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 TMEM117Q9H0C3 514 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 JMJD4Q9H9V9 463 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 METTL5Q9NRN9 209 aaKnown RBP8.01□□□□□ -1.13
VPS13D-211ENST00000543710 DPP3Q9NY33 737 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 MORF4L1Q9UBU8 362 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 DYRK1BQ9Y463 629 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 ALG6Q9Y672 507 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 COL5A2P05997 1499 aaPredicted RBP8.01□□□□□ -1.13
VPS13D-211ENST00000543710 PHRF1Q9P1Y6 1649 aaKnown RBP8.01□□□□□ -1.13
VPS13D-211ENST00000543710 PHLPP1O60346 1717 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 RICTORQ6R327 1708 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 UBR1Q8IWV7 1749 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 BCL9LQ86UU0 1499 aa8.01□□□□□ -1.13
VPS13D-211ENST00000543710 HEATR9A2RTY3 570 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 H0Y3Z8 333 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 DNALI1O14645 258 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 TRIM66O15016 1216 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 OGTO15294 1046 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 RTN3O95197 1032 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 HNRNPCP07910 306 aaKnown RBP eCLIP8□□□□□ -1.13
VPS13D-211ENST00000543710 SLC10A3P09131 477 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 TPBGLP0DKB5 382 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 TGFB3P10600 412 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CYP24A1Q07973 514 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 MGAT5Q09328 741 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 ST3GAL1Q11201 340 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 NME3Q13232 169 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CRHR2Q13324 411 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 SQLEQ14534 574 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 DMC1Q14565 340 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 TIMM50Q3ZCQ8 353 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 PROSER1Q86XN7 944 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 KIAA2013Q8IYS2 634 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CYGBQ8WWM9 190 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 HHIPL1Q96JK4 782 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 RTP3Q9BQQ7 232 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 ADNPQ9H2P0 1102 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 DNAJC11Q9NVH1 559 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 DCTN4Q9UJW0 460 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 SLC45A1Q9Y2W3 748 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 B2RBV5 119 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 KPNA5O15131 536 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 DNAJA2O60884 412 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 TGDSO95455 350 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 HOXA10P31260 410 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 RAD23AP54725 363 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 POU5F1BQ06416 359 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF211Q13398 564 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 C1DQ13901 141 aaKnown RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 C2CD6Q53TS8 623 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 PLPP4Q5VZY2 271 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 TXNDC11Q6PKC3 985 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 RBM23Q86U06 439 aaKnown RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 CCDC60Q8IWA6 550 aaPredicted RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms