RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	TPI1	P60174	286 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	EIF4EBP2	Q13542	120 aa	Predicted RBP	12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	PDK2	Q15119	407 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	ZNF77	Q15935	545 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	FAM78A	Q5JUQ0	283 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	RABGAP1L	Q5R372	815 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	RAP1GAP2	Q684P5	730 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	SYT10	Q6XYQ8	523 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	PLCD3	Q8N3E9	789 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	ARFGAP1	Q8N6T3	406 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	AZIN2	Q96A70	460 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	HES6	Q96HZ4	224 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	ZFR	Q96KR1	1074 aa	Known RBP	12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	ZSWIM3	Q96MP5	696 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	PHF7	Q9BWX1	381 aa	Predicted RBP	12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	CALN1	Q9BXU9	219 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	KLHL11	Q9NVR0	708 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	GPATCH2L	Q9NWQ4	482 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	STIM2	Q9P246	746 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	THEG	Q9P2T0	379 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	CCL26	Q9Y258	94 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	PCDHA3	Q9Y5H8	950 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	MIA3	Q5JRA6	1907 aa		12.31	□□□□□ -0.44
DDB1-223	ENST00000543658	MYOF	Q9NZM1	2061 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	HEPACAM2	A8MVW5	462 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	EEF2K	O00418	725 aa	Known RBP	12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	KCNK3	O14649	394 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	ZRANB2	O95218	330 aa	Known RBP eCLIP	12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	TACR2	P21452	398 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	MS4A13	Q5J8X5	152 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	NYAP1	Q6ZVC0	841 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	HTR3D	Q70Z44	454 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	CCDC117	Q8IWD4	279 aa	Predicted RBP	12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	KATNAL2	Q8IYT4	538 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	RCOR2	Q8IZ40	523 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	EXD1	Q8NHP7	514 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	DEPDC1B	Q8WUY9	529 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	KRT35	Q92764	455 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	CD101	Q93033	1021 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	OTUB2	Q96DC9	234 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	TBC1D31	Q96DN5	1066 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	WDR24	Q96S15	920 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	PSMB7	Q99436	277 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	MAK16	Q9BXY0	300 aa	Known RBP	12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	OSBPL2	Q9H1P3	480 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	CATSPERB	Q9H7T0	1116 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	TRPV4	Q9HBA0	871 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	TMPRSS4	Q9NRS4	437 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	EPS15L1	Q9UBC2	864 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	OR12D3	Q9UGF7	316 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	AGO1	Q9UL18	857 aa	Known RBP	12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	HS3ST4	Q9Y661	456 aa		12.3	□□□□□ -0.44
DDB1-223	ENST00000543658	TICRR	Q7Z2Z1	1910 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658		E9PAM4	449 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	PI4K2B	G5E9Z4	385 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	SCAMP3	O14828	347 aa	Known RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	DDX3Y	O15523	660 aa	Known RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	SRGAP2	O75044	1071 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	ATP1A1	P05023	1023 aa	Known RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	TCP1	P17987	556 aa	Known RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	KDELR1	P24390	212 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	L1CAM	P32004	1257 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	HTR7	P34969	479 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	GGCX	P38435	758 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	VIPR2	P41587	438 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	MARCKSL1	P49006	195 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	COPS2	P61201	443 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	SMAD2	Q15796	467 aa	Known RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	DPYSL2	Q16555	572 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	ATP13A4	Q4VNC1	1196 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	ADGRF1	Q5T601	910 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	PIK3R6	Q5UE93	754 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	TTC39B	Q5VTQ0	682 aa	Predicted RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	TXNRD3NB	Q6F5E7	133 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	RWDD4	Q6NW29	188 aa	Known RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658		Q6ZNB5	142 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	RFX6	Q8HWS3	928 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	BBS7	Q8IWZ6	715 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	LGI2	Q8N0V4	545 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	KIAA1958	Q8N8K9	716 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	KIF18A	Q8NI77	898 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	ADAMTS19	Q8TE59	1207 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	RNF25	Q96BH1	459 aa	Predicted RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	ELSPBP1	Q96BH3	223 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	PBK	Q96KB5	322 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	RPGRIP1	Q96KN7	1286 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	C1orf74	Q96LT6	269 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	RPRD1A	Q96P16	312 aa	Predicted RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	KCTD15	Q96SI1	283 aa	Predicted RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	KXD1	Q9BQD3	176 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	ZNF670	Q9BS34	389 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	TLR10	Q9BXR5	811 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	PCDH18	Q9HCL0	1135 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	DUS2	Q9NX74	493 aa	Known RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	DONSON	Q9NYP3	566 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	RCOR3	Q9P2K3	495 aa	Predicted RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	XPO7	Q9UIA9	1087 aa	Known RBP	12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	VANGL2	Q9ULK5	521 aa		12.29	□□□□□ -0.44
DDB1-223	ENST00000543658	SHROOM3	Q8TF72	1996 aa		12.29	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms