RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 SNX11Q9Y5W9 270 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 CABIN1Q9Y6J0 2220 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 GOLGA6L7A0A1B0GV03 622 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 XPO1O14980 1071 aaKnown RBP16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 NPC1O15118 1278 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 DKK1O94907 266 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 CYBBP04839 570 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 HSP90AA1P07900 732 aaKnown RBP16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 TRIM21P19474 475 aaKnown RBP16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 OXTRP30559 389 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 SLC6A4P31645 630 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 GTF2H1P32780 548 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 CD70P32970 193 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 MATKP42679 507 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 ZNF132P52740 706 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 PMS1P54277 932 aaKnown RBP16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 HNRNPDQ14103 355 aaKnown RBP16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 RFWD3Q6PCD5 774 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 DBX2Q6ZNG2 339 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 CHST9Q7L1S5 443 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 KIAA0907Q7Z7F0 614 aaPredicted RBP16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 CLEC4CQ8WTT0 213 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 NUP58Q9BVL2 599 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 SLC2A11Q9BYW1 496 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 LHX5Q9H2C1 402 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 GDPD2Q9HCC8 539 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 STRIP2Q9ULQ0 834 aa16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.14■□□□□ 0.17
CLSTN3-213ENST00000541953 ACACAQ13085 2346 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 GOLGA8CPA6NN73 597 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 CER1O95813 267 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 C7P10643 843 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 ACADMP11310 421 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 RGS7P49802 495 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 BCAT1P54687 386 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 RPS14P62263 151 aaKnown RBP16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 CUL2Q13617 745 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 COL28A1Q2UY09 1125 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 PKDCCQ504Y2 493 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 FNDC3BQ53EP0 1204 aaKnown RBP16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 FAM133BQ5BKY9 247 aaKnown RBP16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 BSPRYQ5W0U4 402 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 ARHGAP18Q8N392 663 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 CCDC150Q8NCX0 1101 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 TFAP2BQ92481 460 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 ERCC4Q92889 916 aaPredicted RBP16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 MYO19Q96H55 970 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 LMLNQ96KR4 655 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 TM9SF3Q9HD45 589 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 PRSS16Q9NQE7 514 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 SERGEFQ9UGK8 458 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 GGA2Q9UJY4 613 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 STOML2Q9UJZ1 356 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 RAXQ9Y2V3 346 aa16.13■□□□□ 0.17
CLSTN3-213ENST00000541953 FAM149AA5PLN7 773 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 TRIM49BA6NDI0 452 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 O00370 1275 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 ZNF883P0CG24 379 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 CD19P15391 556 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 RPL13P26373 211 aaKnown RBP16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 RDXP35241 583 aaKnown RBP16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 DAOAP59103 153 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 IL9RQ01113 521 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 LRMPQ12912 555 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 PNOCQ13519 176 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 EDRF1Q3B7T1 1238 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 MPPE1Q53F39 396 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 DCAF17Q5H9S7 520 aaPredicted RBP16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 MBLAC2Q68D91 279 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 NADSYN1Q6IA69 706 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 KAT5Q92993 513 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 BIRC7Q96CA5 298 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 PRICKLE1Q96MT3 831 aaPredicted RBP16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 COQ4Q9Y3A0 265 aa16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 GCN1Q92616 2671 aaKnown RBP16.12■□□□□ 0.17
CLSTN3-213ENST00000541953 SEMA4FO95754 770 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 IGLV3-27P01718 113 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 IGHV4-34P06331 123 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 PABPC1P11940 636 aaKnown RBP16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 LCP1P13796 627 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 PRCPP42785 496 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 HARS2P49590 506 aaKnown RBP16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 CLDN6P56747 220 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 KRT85P78386 507 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 BST2Q10589 180 aaKnown RBP16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 SGO2Q562F6 1265 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 ADGRF1Q5T601 910 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 TCERG1LQ5VWI1 586 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 RHBDD1Q8TEB9 315 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 CRELD1Q96HD1 420 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 BBC3Q96PG8 261 aaPredicted RBP16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 CCDC86Q9H6F5 360 aaKnown RBP16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 EBF2Q9HAK2 575 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 LRRC4Q9HBW1 653 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 INTS6Q9UL03 887 aaKnown RBP16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 APOBEC2Q9Y235 224 aaKnown RBP16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 ANKRD6Q9Y2G4 727 aa16.11■□□□□ 0.17
CLSTN3-213ENST00000541953 HBS1LQ9Y450 684 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms