RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MPP5Q8N3R9 675 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 SAMD3Q8N6K7 520 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 IRGQQ8WZA9 623 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 DHX33Q9H6R0 707 aaKnown RBP13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 NGRNQ9NPE2 291 aaKnown RBP13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 GPATCH2LQ9NWQ4 482 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 TCP10L2B9ZVM9 353 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 H0YCG3 227 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 PLIN3O60664 434 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 GRAP2O75791 330 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 LYPLA2O95372 231 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 NUP107P57740 925 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 PPM1LQ5SGD2 360 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 TNS4Q8IZW8 715 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 PDCD6IPQ8WUM4 868 aaKnown RBP13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 TFAP2BQ92481 460 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 ATP6V0A1Q93050 837 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 RCN3Q96D15 328 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 ZDHHC15Q96MV8 337 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 MTMR12Q9C0I1 747 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 C20orf96Q9NUD7 363 aaPredicted RBP13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 ASNSD1Q9NWL6 643 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 CEPT1Q9Y6K0 416 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 ZNF541Q9H0D2 1346 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 GIPC1O14908 333 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 ZBTB14O43829 449 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 CPA3P15088 417 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 SFNP31947 248 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 PPM1JQ5JR12 505 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 C16orf87Q6PH81 154 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 PACS1Q6VY07 963 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 DSELQ8IZU8 1212 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 UBR7Q8N806 425 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 NIPA2Q8N8Q9 360 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 FAM156AQ8NDB6 213 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 ADAM32Q8TC27 787 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 RMND5BQ96G75 393 aaPredicted RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 CGRRF1Q99675 332 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 GCOM2Q9BZD3 368 aaPredicted RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 ZNF518BQ9C0D4 1074 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 PCDH18Q9HCL0 1135 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 PPP1R1BQ9UD71 204 aaPredicted RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 PCDHA10Q9Y5I2 948 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 FOXD2O60548 495 aaPredicted RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 CCNE2O96020 404 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 CST3P01034 146 aaPredicted RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 GMPRP36959 345 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 YWHAEP62258 255 aaKnown RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 CCDC92Q53HC0 331 aaPredicted RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 MAVSQ7Z434 540 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 GPR141Q7Z602 305 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 KIAA0319LQ8IZA0 1049 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 EBNA1BP2Q99848 306 aaKnown RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 SLC4A5Q9BY07 1137 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 PDGFDQ9GZP0 370 aaPredicted RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 WDR55Q9H6Y2 383 aaPredicted RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 FBXO40Q9UH90 709 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 DCDC2Q9UHG0 476 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 CLEC11AQ9Y240 323 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 MYRFQ9Y2G1 1151 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 XPOTO43592 962 aaKnown RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 CSDE1O75534 798 aaKnown RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 DGAT1O75907 488 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 ME2P23368 584 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 MRPS9P82933 396 aaKnown RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 SLC9B1Q4ZJI4 515 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 FAM47CQ5HY64 1035 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 ARHGEF16Q5VV41 709 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 NCCRP1Q6ZVX7 275 aaPredicted RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 ZBTB46Q86UZ6 589 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 CAND1Q86VP6 1230 aaKnown RBP13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 ARFGAP1Q8N6T3 406 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 ZNF781Q8N8C0 355 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 TAAR1Q96RJ0 339 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 NIF3L1Q9GZT8 377 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 XPNPEP3Q9NQH7 507 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 ACSS2Q9NR19 701 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 FAIMQ9NVQ4 179 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 SNX13Q9Y5W8 968 aa13.19□□□□□ -0.3
SFSWAP-209ENST00000540469 WDR27A2RRH5 827 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 TRIM43BA6NCK2 446 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 APOL1O14791 398 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 SEC24DO94855 1032 aaPredicted RBP13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 FBXO21O94952 628 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 LDHAP00338 332 aaKnown RBP13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 PAX3P23760 479 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 PIK3R1P27986 724 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 CDH15P55291 814 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 PCLAFQ15004 111 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 ZNF699Q32M78 642 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 SLFN12LQ6IEE8 588 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 MYO1HQ8N1T3 1032 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 RMDN3Q96TC7 470 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 OSBPL6Q9BZF3 934 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 ZNF358Q9NW07 568 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 MKS1Q9NXB0 559 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 SELENONQ9NZV5 590 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 PRPF19Q9UMS4 504 aaKnown RBP13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 STX16-NPEPL1H3BU86 382 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 L1CAMP32004 1257 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms