RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 COX16Q9P0S2 106 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 HCN2Q9UL51 889 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 STAP1Q9ULZ2 295 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 SLC27A6Q9Y2P4 619 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 STARD13Q9Y3M8 1113 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 BZW2Q9Y6E2 419 aaKnown RBP20.61■□□□□ 0.89
CPSF1-209ENST00000532725 PRRT4C9JH25 899 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 ENDOD1O94919 500 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 MOCS2O96007 188 aaPredicted RBP20.6■□□□□ 0.89
CPSF1-209ENST00000532725 F9P00740 461 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 CXCR3P49682 368 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 SULT1E1P49888 294 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 SEC13P55735 322 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 MRPS21P82921 87 aaKnown RBP20.6■□□□□ 0.89
CPSF1-209ENST00000532725 C2orf27AQ580R0 203 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 MS4A13Q5J8X5 152 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 RNF43Q68DV7 783 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 SARM1Q6SZW1 724 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 NUDT18Q6ZVK8 323 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 GAS2L3Q86XJ1 694 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 VSTM4Q8IW00 320 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 EMC1Q8N766 993 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 ATP6V0D2Q8N8Y2 350 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 KCNV2Q8TDN2 545 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 RNF34Q969K3 372 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 VCPIP1Q96JH7 1222 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 TBCBQ99426 244 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 PRMT1Q99873 361 aaKnown RBP20.6■□□□□ 0.89
CPSF1-209ENST00000532725 PIGVQ9NUD9 493 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 POLR3BQ9NW08 1133 aaPredicted RBP20.6■□□□□ 0.89
CPSF1-209ENST00000532725 TMEM51Q9NW97 253 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 SLC12A6Q9UHW9 1150 aa20.6■□□□□ 0.89
CPSF1-209ENST00000532725 C2CD4BA6NLJ0 364 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 SIGLEC16A6NMB1 481 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 K7ESF4 209 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 GJB6O95452 261 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 KRT3P12035 628 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 ABCB4P21439 1286 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 CCDC14Q49A88 953 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 PPP1R2P3Q6NXS1 205 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 SYT13Q7L8C5 426 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 C3orf20Q8ND61 904 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 JOSD2Q8TAC2 188 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 RXFP2Q8WXD0 754 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 CFAP57Q96MR6 1250 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 ARHGEF38Q9NXL2 777 aa20.59■□□□□ 0.89
CPSF1-209ENST00000532725 MYO18AQ92614 2054 aaKnown RBP20.58■□□□□ 0.89
CPSF1-209ENST00000532725 TMCO5BA8MYB1 307 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 TBL1XO60907 577 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 ADCY5O95622 1261 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 SERPING1P05155 500 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 PDGFRAP16234 1089 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 TACR2P21452 398 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 HOXC13P31276 330 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 HNRNPH3P31942 346 aaKnown RBP20.58■□□□□ 0.89
CPSF1-209ENST00000532725 RFC1P35251 1148 aaPredicted RBP20.58■□□□□ 0.89
CPSF1-209ENST00000532725 DEUP1Q05D60 604 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 MTA1Q13330 715 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 C10orf76Q5T2E6 689 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 RAP1GAP2Q684P5 730 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 IL17RCQ8NAC3 791 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 PRICKLE1Q96MT3 831 aaPredicted RBP20.58■□□□□ 0.89
CPSF1-209ENST00000532725 WDCPQ9H6R7 721 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 ANLNQ9NQW6 1124 aa20.58■□□□□ 0.89
CPSF1-209ENST00000532725 I6L893 689 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-209ENST00000532725 FTLP02792 175 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-209ENST00000532725 RRM1P23921 792 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 HOXA6P31267 233 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 TIE1P35590 1138 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 ATXN1P54253 815 aaKnown RBP20.57■□□□□ 0.88
CPSF1-209ENST00000532725 RPS24P62847 133 aaKnown RBP20.57■□□□□ 0.88
CPSF1-209ENST00000532725 GEN1Q17RS7 908 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 HSF5Q4G112 596 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-209ENST00000532725 BRMS1LQ5PSV4 323 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 PPP1R15BQ5SWA1 713 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 WDR59Q6PJI9 974 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 DNAAF5Q86Y56 855 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 DRC7Q8IY82 874 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 LGI2Q8N0V4 545 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 CCDC33Q8N5R6 958 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 ALLCQ8N6M5 410 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 CENPIQ92674 756 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-209ENST00000532725 SELENOOQ9BVL4 669 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 FAM126AQ9BYI3 521 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-209ENST00000532725 FAM86C1Q9NVL1 165 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 ADAMTS1Q9UHI8 967 aa20.57■□□□□ 0.88
CPSF1-209ENST00000532725 KIAA1549LQ6ZVL6 1849 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 RTN2O75298 545 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 PAGE1O75459 146 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 PLEKP08567 350 aaPredicted RBP20.56■□□□□ 0.88
CPSF1-209ENST00000532725 HLA-FP30511 346 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 NBL1P41271 181 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 PTPN9P43378 593 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 TRIM14Q14142 442 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 ARID5BQ14865 1188 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 SH3PXD2AQ5TCZ1 1133 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 SND1Q7KZF4 910 aaKnown RBP eCLIP20.56■□□□□ 0.88
CPSF1-209ENST00000532725 KIAA0907Q7Z7F0 614 aaPredicted RBP20.56■□□□□ 0.88
CPSF1-209ENST00000532725 CFAP52Q8N1V2 620 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 HJURPQ8NCD3 748 aaPredicted RBP20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms