RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 STK33Q9BYT3 514 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 IRX2Q9BZI1 471 aaPredicted RBP9.71□□□□□ -0.86
HDAC3-215ENST00000519474 SLC6A17Q9H1V8 727 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 PDCL3Q9H2J4 239 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 PLCB1Q9NQ66 1216 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 XPO7Q9UIA9 1087 aaKnown RBP9.71□□□□□ -0.86
HDAC3-215ENST00000519474 FHOD1Q9Y613 1164 aa9.71□□□□□ -0.86
HDAC3-215ENST00000519474 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 DCDC2BA2VCK2 349 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 KCNU1A8MYU2 1149 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 SLC30A4O14863 429 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 NPC1O15118 1278 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 MAP3K13O43283 966 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 TBL1XO60907 577 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 GRAP2O75791 330 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 ERBB2P04626 1255 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 GLI1P08151 1106 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 CYP11B1P15538 503 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 NDUFV2P19404 249 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 CD70P32970 193 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 CDH5P33151 784 aaPredicted RBP9.7□□□□□ -0.86
HDAC3-215ENST00000519474 MPLP40238 635 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 GABRB2P47870 512 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 KLK7P49862 253 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 ZNF445P59923 1031 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 RPS24P62847 133 aaKnown RBP9.7□□□□□ -0.86
HDAC3-215ENST00000519474 IRX4P78413 519 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 SLC6A3Q01959 620 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 CREB5Q02930 508 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 BYSLQ13895 437 aaKnown RBP9.7□□□□□ -0.86
HDAC3-215ENST00000519474 NCAPHQ15003 741 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 FUT11Q495W5 492 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 PTPN20Q4JDL3 420 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 DCAF6Q58WW2 860 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 MS4A13Q5J8X5 152 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 TAF3Q5VWG9 929 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 CHST9Q7L1S5 443 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 METTL3Q86U44 580 aaKnown RBP9.7□□□□□ -0.86
HDAC3-215ENST00000519474 TAC4Q86UU9 113 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 C11orf74Q86VG3 221 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 TMEFF1Q8IYR6 380 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 CFAP52Q8N1V2 620 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 DEFB119Q8N690 84 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.7□□□□□ -0.86
HDAC3-215ENST00000519474 C1orf131Q8NDD1 294 aaKnown RBP9.7□□□□□ -0.86
HDAC3-215ENST00000519474 UCMAQ8WVF2 138 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 SERPINB11Q96P15 392 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 SLC2A13Q96QE2 648 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 LSM14BQ9BX40 385 aaKnown RBP9.7□□□□□ -0.86
HDAC3-215ENST00000519474 HSD3B7Q9H2F3 369 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 CD93Q9NPY3 652 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 ITM2CQ9NQX7 267 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 VPS45Q9NRW7 570 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 TMEM74BQ9NUR3 256 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 ABCB8Q9NUT2 735 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 ANO10Q9NW15 660 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.7□□□□□ -0.86
HDAC3-215ENST00000519474 ASNSD1Q9NWL6 643 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 STIM2Q9P246 746 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 INTS6Q9UL03 887 aaKnown RBP9.7□□□□□ -0.86
HDAC3-215ENST00000519474 THADAQ6YHU6 1953 aa9.7□□□□□ -0.86
HDAC3-215ENST00000519474 VPS13AQ96RL7 3174 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 IGHV1OR15-9A0A0B4J2B8 117 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 GOLGA6L22H0YM25 854 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 ZBTB24O43167 697 aaPredicted RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 IRAK2O43187 625 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 FOXD2O60548 495 aaPredicted RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 PABPC1P11940 636 aaKnown RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 NOS2P35228 1153 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 PTGER3P43115 390 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 DHPSP49366 369 aaPredicted RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 COPB1P53618 953 aaKnown RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 COPAP53621 1224 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 CDK17Q00537 523 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 RAPGEF1Q13905 1077 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 EIF4HQ15056 248 aaKnown RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 PTPRNQ16849 979 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 FSCBQ5H9T9 825 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 SPDYCQ5MJ68 293 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 MBLAC2Q68D91 279 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 TCEAL6Q6IPX3 200 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 OLFML1Q6UWY5 402 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 FAM183BPQ6ZVS7 135 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 LPCAT2Q7L5N7 544 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 APTXQ7Z2E3 356 aaKnown RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 DGLUCYQ7Z3D6 616 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 ANKS1BQ7Z6G8 1248 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 NOP9Q86U38 636 aaKnown RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 TMPRSS6Q8IU80 811 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 ZNF397Q8NF99 534 aaPredicted RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 NETO1Q8TDF5 533 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 CYB5D2Q8WUJ1 264 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 TCEAL3Q969E4 200 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 TTC17Q96AE7 1141 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 ZNF830Q96NB3 372 aaPredicted RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 PRMT1Q99873 361 aaKnown RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 DDX50Q9BQ39 737 aaKnown RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 RTKNQ9BST9 563 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 ADAM33Q9BZ11 813 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 CIPCQ9C0C6 399 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms