RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CSTF1Q05048 431 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 MESP2Q0VG99 397 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 VWA3BQ502W6 1294 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 TCP11X2Q5H9J9 407 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 DAB2IPQ5VWQ8 1189 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 PMF1Q6P1K2 205 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 IRF2BP1Q8IU81 584 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 SLC4A11Q8NBS3 891 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 TMC2Q8TDI7 906 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 TEKT4Q8WW24 435 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 USP13Q92995 863 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 ASIC4Q96FT7 647 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 PIWIL1Q96J94 861 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 GORASP1Q9BQQ3 440 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 SMOC1Q9H4F8 434 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 CBX8Q9HC52 389 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 C2orf42Q9NWW7 574 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 ATP8A1Q9Y2Q0 1164 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 NCANO14594 1321 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 E5RJQ4 531 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 IKBKBO14920 756 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 AKR1B10O60218 316 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 OPA1O60313 960 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 SASH3O75995 380 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 DDX5P17844 614 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 ATICP31939 592 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 UBASH3AP57075 661 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 PITX1P78337 314 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 LONRF2Q1L5Z9 754 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 ACCSLQ4AC99 568 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 LY6G5CQ5SRR4 150 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 AGAP9Q5VTM2 703 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 LCA5Q86VQ0 697 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 BBS7Q8IWZ6 715 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 EHBP1Q8NDI1 1231 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 RIN3Q8TB24 985 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 ASB16Q96NS5 453 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 HHIPQ96QV1 700 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 BBS2Q9BXC9 721 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 PREBQ9HCU5 417 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 TMPRSS4Q9NRS4 437 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 DERAQ9Y315 318 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 SNX10Q9Y5X0 201 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 OTOGLQ3ZCN5 2332 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 ACACBO00763 2458 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 TMEM189-UBE2V1I3L0A0 370 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 COCHO43405 550 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 MICAL2O94851 1124 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 NPR3P17342 541 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 SLC6A11P48066 632 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 COPB1P53618 953 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 MFAP3P55082 362 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 ZXDAP98168 799 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 PTK2Q05397 1052 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 MTF1Q14872 753 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 MAPRE1Q15691 268 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 MAN2A1Q16706 1144 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 HECTD3Q5T447 861 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 CWF19L1Q69YN2 538 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 PAQR9Q6ZVX9 377 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 CHPFQ8IZ52 775 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 FAM9CQ8IZT9 166 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 ZMIZ2Q8NF64 920 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 SUSD6Q92537 303 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 MTG2Q9H4K7 406 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 UBE4BO95155 1302 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 CILPO75339 1184 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 HNRNPA1P09651 372 aaKnown RBP eCLIP8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 POU3F3P20264 500 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 PON1P27169 355 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 ATXN1P54253 815 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 LRP8Q14114 963 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 MRPL58Q14197 206 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 ALYREFQ86V81 257 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 TRIM59Q8IWR1 403 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 FAM3CQ92520 227 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 NAALADL1Q9UQQ1 740 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 RAD54BQ9Y620 910 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 ASPMQ8IZT6 3477 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 SMIM23A6NLE4 172 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 DCLK1O15075 740 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 RNF8O76064 485 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 HMGA1P17096 107 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 ZXDBP98169 803 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 FAM102AQ5T9C2 384 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 FRMD5Q7Z6J6 570 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 TMEM25Q86YD3 366 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 NT5DC4Q86YG4 428 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 MFN1Q8IWA4 741 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 GABPB2Q8TAK5 448 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 HMGB4Q8WW32 186 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 ZNF606Q8WXB4 792 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 SLC6A17Q9H1V8 727 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 TASP1Q9H6P5 420 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 THG1LQ9NWX6 298 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 OSER1Q9NX31 292 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 GDAP2Q9NXN4 497 aa8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 R3HDM2Q9Y2K5 976 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-219ENST00000514096 TTLL3Q9Y4R7 772 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms