RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 ABCB8Q9NUT2 735 aa17.13■□□□□ 0.33
DDX41-213ENST00000512027 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.13■□□□□ 0.33
DDX41-213ENST00000512027 CEP192Q8TEP8 1941 aa17.13■□□□□ 0.33
DDX41-213ENST00000512027 NUP205Q92621 2012 aa17.13■□□□□ 0.33
DDX41-213ENST00000512027 LAMA1P25391 3075 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 TNRC6BQ9UPQ9 1833 aaKnown RBP17.12■□□□□ 0.33
DDX41-213ENST00000512027 CD70P32970 193 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 IL12RB1P42701 662 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 JAM2P57087 298 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 RPS24P62847 133 aaKnown RBP17.12■□□□□ 0.33
DDX41-213ENST00000512027 UBXN1Q04323 297 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 NNTQ13423 1086 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 USP39Q53GS9 565 aaKnown RBP17.12■□□□□ 0.33
DDX41-213ENST00000512027 RAP1GAP2Q684P5 730 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 BEND5Q7L4P6 421 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 DHX40Q8IX18 779 aaKnown RBP17.12■□□□□ 0.33
DDX41-213ENST00000512027 CFAP52Q8N1V2 620 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 TMEM35BQ8NCS4 154 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 OLIG1Q8TAK6 271 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 KCNV2Q8TDN2 545 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 ADAM33Q9BZ11 813 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 CD93Q9NPY3 652 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 SEMA4GQ9NTN9 838 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 DDIT4Q9NX09 232 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 CALCOCO1Q9P1Z2 691 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 NOCTQ9UK39 431 aaKnown RBP17.12■□□□□ 0.33
DDX41-213ENST00000512027 CEP83Q9Y592 693 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 STON1Q9Y6Q2 735 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 CKAP5Q14008 2032 aa17.12■□□□□ 0.33
DDX41-213ENST00000512027 HSF2BPO75031 334 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 DAB1O75553 588 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 EPN2O95208 641 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 APOEP02649 317 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 NDUFV2P19404 249 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 TFE3P19532 575 aaPredicted RBP17.11■□□□□ 0.33
DDX41-213ENST00000512027 CDH5P33151 784 aaPredicted RBP17.11■□□□□ 0.33
DDX41-213ENST00000512027 NUMBP49757 651 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 RNASE9P60153 205 aaKnown RBP17.11■□□□□ 0.33
DDX41-213ENST00000512027 SLC6A3Q01959 620 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 ZNF234Q14588 700 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 EFHC1Q5JVL4 640 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 OTUD1Q5VV17 481 aaPredicted RBP17.11■□□□□ 0.33
DDX41-213ENST00000512027 CHST9Q7L1S5 443 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 CHSY1Q86X52 802 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 ANKRD20A12PQ8NF67 263 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 CYB5D2Q8WUJ1 264 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 CPA5Q8WXQ8 436 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 RMDN1Q96DB5 314 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 ZC3H10Q96K80 434 aaKnown RBP17.11■□□□□ 0.33
DDX41-213ENST00000512027 TRIM62Q9BVG3 475 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 SLC2A11Q9BYW1 496 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 ASNSD1Q9NWL6 643 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 ELOVL2Q9NXB9 296 aa17.11■□□□□ 0.33
DDX41-213ENST00000512027 THAP10Q9P2Z0 257 aaPredicted RBP17.11■□□□□ 0.33
DDX41-213ENST00000512027 MBD1Q9UIS9 605 aaPredicted RBP17.11■□□□□ 0.33
DDX41-213ENST00000512027 SYCE3A1L190 88 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 GOLGA8SH3BPF8 625 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 TEX33O43247 280 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 HLA-EP13747 358 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 CHRNB2P17787 502 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 PRKCHP24723 683 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 SOX5P35711 763 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 GGCXP38435 758 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 P2RY2P41231 377 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 ZNF445P59923 1031 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 NOMO3P69849 1222 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 CDK17Q00537 523 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 NME3Q13232 169 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 EIF4EBP2Q13542 120 aaPredicted RBP17.1■□□□□ 0.33
DDX41-213ENST00000512027 SF3A2Q15428 464 aaKnown RBP17.1■□□□□ 0.33
DDX41-213ENST00000512027 MAP7D1Q3KQU3 841 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 MS4A13Q5J8X5 152 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 NAA35Q5VZE5 725 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 RNF43Q68DV7 783 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 SMYD5Q6GMV2 418 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 SDE2Q6IQ49 451 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 MMS22LQ6ZRQ5 1243 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 SLC26A9Q7LBE3 791 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 CIR1Q86X95 450 aaPredicted RBP17.1■□□□□ 0.33
DDX41-213ENST00000512027 CACUL1Q86Y37 369 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 XYLT1Q86Y38 959 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 LGI2Q8N0V4 545 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 CARNMT1Q8N4J0 409 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 ZNF366Q8N895 744 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 HJURPQ8NCD3 748 aaPredicted RBP17.1■□□□□ 0.33
DDX41-213ENST00000512027 NEK11Q8NG66 645 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 AZIN2Q96A70 460 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 SPAG5Q96R06 1193 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 FUCA2Q9BTY2 467 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 GGA2Q9UJY4 613 aa17.1■□□□□ 0.33
DDX41-213ENST00000512027 GLI1P08151 1106 aa17.09■□□□□ 0.33
DDX41-213ENST00000512027 PABPC1P11940 636 aaKnown RBP17.09■□□□□ 0.33
DDX41-213ENST00000512027 TACR2P21452 398 aa17.09■□□□□ 0.33
DDX41-213ENST00000512027 ID4P47928 161 aa17.09■□□□□ 0.33
DDX41-213ENST00000512027 FMO1Q01740 532 aa17.09■□□□□ 0.33
DDX41-213ENST00000512027 ARID5AQ03989 594 aa17.09■□□□□ 0.33
DDX41-213ENST00000512027 ELF2Q15723 593 aa17.09■□□□□ 0.33
DDX41-213ENST00000512027 FUT11Q495W5 492 aa17.09■□□□□ 0.33
DDX41-213ENST00000512027 FAM102AQ5T9C2 384 aaPredicted RBP17.09■□□□□ 0.33
DDX41-213ENST00000512027 PMS2CLQ68D20 193 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms