RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 GOLGA6L7A0A1B0GV03 622 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 MACROD2A1Z1Q3 448 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 OTOL1A6NHN0 477 aaPredicted RBP30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 TCF4P15884 667 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 CHKAP35790 457 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 RFWD3Q6PCD5 774 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 ADGRG2Q8IZP9 1017 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 CPXM2Q8N436 756 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 TTC8Q8TAM2 541 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 NCAPGQ9BPX3 1015 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 SPHK2Q9NRA0 654 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 HS3ST4Q9Y661 456 aa30.67■■■□□ 2.5
LIMCH1-211ENST00000509638 TRDMT1O14717 391 aaKnown RBP30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 PRPSAP2O60256 369 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 BUB1BO60566 1050 aaPredicted RBP30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 ADRA1BP35368 520 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 NAP1L1P55209 391 aaKnown RBP30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 RUNX3Q13761 415 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 LY6G5CQ5SRR4 150 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 TPGS1Q6ZTW0 290 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 CSGALNACT1Q8TDX6 532 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 DDX50Q9BQ39 737 aaKnown RBP30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 SIK2Q9H0K1 926 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 ECT2Q9H8V3 914 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 USP18Q9UMW8 372 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 MIA3Q5JRA6 1907 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 ADH1CP00326 375 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 SSR1P43307 286 aaKnown RBP30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 PFKPQ01813 784 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 SCAPQ12770 1279 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 DHCR24Q15392 516 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 ITPRIPL2Q3MIP1 535 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 CYP4V2Q6ZWL3 525 aaPredicted RBP30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 SLFN11Q7Z7L1 901 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 TMEM25Q86YD3 366 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 TPCN2Q8NHX9 752 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 BHMTQ93088 406 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 PRICKLE1Q96MT3 831 aaPredicted RBP30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 HAPLN3Q96S86 360 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 PRMT1Q99873 361 aaKnown RBP30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 TRPV5Q9NQA5 729 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 SNX10Q9Y5X0 201 aa30.66■■■□□ 2.5
LIMCH1-211ENST00000509638 KIAA1549LQ6ZVL6 1849 aa30.65■■■□□ 2.5
LIMCH1-211ENST00000509638 TSPAN3O60637 253 aa30.65■■■□□ 2.5
LIMCH1-211ENST00000509638 SLC34A2O95436 690 aa30.65■■■□□ 2.5
LIMCH1-211ENST00000509638 TACR2P21452 398 aa30.65■■■□□ 2.5
LIMCH1-211ENST00000509638 SLC25A11Q02978 314 aaKnown RBP30.65■■■□□ 2.5
LIMCH1-211ENST00000509638 EFHC2Q5JST6 749 aa30.65■■■□□ 2.5
LIMCH1-211ENST00000509638 RHBDF2Q6PJF5 856 aa30.65■■■□□ 2.5
LIMCH1-211ENST00000509638 GOLPH3Q9H4A6 298 aa30.65■■■□□ 2.5
LIMCH1-211ENST00000509638 KRT86O43790 486 aa30.64■■■□□ 2.5
LIMCH1-211ENST00000509638 ADH5P11766 374 aa30.64■■■□□ 2.5
LIMCH1-211ENST00000509638 IL1R2P27930 398 aa30.64■■■□□ 2.5
LIMCH1-211ENST00000509638 AIF1P55008 147 aa30.64■■■□□ 2.5
LIMCH1-211ENST00000509638 C11orf63Q6NUN7 778 aa30.64■■■□□ 2.5
LIMCH1-211ENST00000509638 SNRNP25Q9BV90 132 aaKnown RBP30.64■■■□□ 2.5
LIMCH1-211ENST00000509638 LZTFL1Q9NQ48 299 aa30.64■■■□□ 2.5
LIMCH1-211ENST00000509638 FZD10Q9ULW2 581 aa30.64■■■□□ 2.5
LIMCH1-211ENST00000509638 F5H5T6 163 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 GFRA2O00451 464 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 SGSHP51688 502 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 SMTNL2Q2TAL5 461 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 ANO4Q32M45 955 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 UBALD2Q8IYN6 164 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 LGI2Q8N0V4 545 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 MYEOVQ96EZ4 313 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 P2RY11Q96G91 374 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 CALR3Q96L12 384 aaKnown RBP30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 ZWILCHQ9H900 591 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 HEBP1Q9NRV9 189 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 GPATCH2LQ9NWQ4 482 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 AP4E1Q9UPM8 1137 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 HYOU1Q9Y4L1 999 aa30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP30.63■■■□□ 2.49
LIMCH1-211ENST00000509638 DOCK4Q8N1I0 1966 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 NEDD8-MDP1E9PL57 170 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 AUHQ13825 339 aaKnown RBP30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 DAAM2Q86T65 1068 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 BBS2Q9BXC9 721 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 MARK1Q9P0L2 795 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 VANGL2Q9ULK5 521 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 PYCARDQ9ULZ3 195 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 GUCA1BQ9UMX6 200 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 F5P12259 2224 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 MOCS3O95396 460 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 GJC1P36383 396 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 SOX9P48436 509 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 MLLT6P55198 1093 aaPredicted RBP30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 NR1H3Q13133 447 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 IFI16Q16666 785 aaKnown RBP30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 TXNRD3NBQ6F5E7 133 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 ZNF662Q6ZS27 426 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 PLK2Q9NYY3 685 aa30.62■■■□□ 2.49
LIMCH1-211ENST00000509638 HOXC11O43248 304 aaPredicted RBP30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 SPOPO43791 374 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 CYBBP04839 570 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 COMTP21964 271 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 TAS2R40P59535 323 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 HADHQ16836 314 aaKnown RBP30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 KCNT1Q5JUK3 1230 aa30.61■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms