RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 OTUB2Q96DC9 234 aa12.33□□□□□ -0.44
CUX1-210ENST00000497815 PEBP4Q96S96 227 aa12.33□□□□□ -0.44
CUX1-210ENST00000497815 MAGEB5Q9BZ81 275 aa12.33□□□□□ -0.44
CUX1-210ENST00000497815 GOLPH3Q9H4A6 298 aa12.33□□□□□ -0.44
CUX1-210ENST00000497815 PYCARDQ9ULZ3 195 aa12.33□□□□□ -0.44
CUX1-210ENST00000497815 USP18Q9UMW8 372 aa12.33□□□□□ -0.44
CUX1-210ENST00000497815 GUCA1BQ9UMX6 200 aa12.33□□□□□ -0.44
CUX1-210ENST00000497815 HS3ST4Q9Y661 456 aa12.33□□□□□ -0.44
CUX1-210ENST00000497815 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.33□□□□□ -0.441e-9■■□□□ 12.2
CUX1-210ENST00000497815 OTOL1A6NHN0 477 aaPredicted RBP12.32□□□□□ -0.44
CUX1-210ENST00000497815 BTNL10A8MVZ5 291 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 NEDD8-MDP1E9PL57 170 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 ARNTLO00327 626 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 KRT86O43790 486 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 SRGAP2O75044 1071 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 LATS1O95835 1130 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 CYP17A1P05093 508 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 SRFP11831 508 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 TNNT1P13805 278 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 TACR2P21452 398 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 CHKAP35790 457 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 ARHGAP25P42331 645 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 SOX9P48436 509 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 ACAP1Q15027 740 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 DHCR24Q15392 516 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 SMTNL2Q2TAL5 461 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 ITPRIPL2Q3MIP1 535 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 EFHC2Q5JST6 749 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 KCNT1Q5JUK3 1230 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 LY6G5CQ5SRR4 150 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 PIK3R6Q5UE93 754 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 RHBDF2Q6PJF5 856 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 C14orf80Q86SX3 495 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 DAAM2Q86T65 1068 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 CFAP52Q8N1V2 620 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 PYROXD2Q8N2H3 581 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 TPCN2Q8NHX9 752 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 HSPH1Q92598 858 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 AZIN2Q96A70 460 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 MYEOVQ96EZ4 313 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 DDX50Q9BQ39 737 aaKnown RBP12.32□□□□□ -0.44
CUX1-210ENST00000497815 BBS2Q9BXC9 721 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 TSGA10Q9BZW7 698 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 ECT2Q9H8V3 914 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 SPHK2Q9NRA0 654 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 HEBP1Q9NRV9 189 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 TMEM51Q9NW97 253 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 PLK2Q9NYY3 685 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 LCMT1Q9UIC8 334 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 VANGL2Q9ULK5 521 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 FZD10Q9ULW2 581 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 DUSP12Q9UNI6 340 aa12.32□□□□□ -0.44
CUX1-210ENST00000497815 UNC80Q8N2C7 3258 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 F5H5T6 163 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 SPOPO43791 374 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 ADH1CP00326 375 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 CYBBP04839 570 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 ADH5P11766 374 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 COMTP21964 271 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 IL1R2P27930 398 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 MAN1A1P33908 653 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 PCK1P35558 622 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 SGSHP51688 502 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 HADHBP55084 474 aaKnown RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 TAS2R40P59535 323 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 NR1H3Q13133 447 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 AUHQ13825 339 aaKnown RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 IFI16Q16666 785 aaKnown RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 HADHQ16836 314 aaKnown RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 IER5LQ5T953 404 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 TXNRD3NBQ6F5E7 133 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 CIR1Q86X95 450 aaPredicted RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 FAM217AQ8IXS0 508 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 CPXM2Q8N436 756 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 KIAA1958Q8N8K9 716 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 NAT16Q8N8M0 369 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 DDI1Q8WTU0 396 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 NTAN1Q96AB6 310 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 TMA16Q96EY4 203 aaKnown RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 PRICKLE1Q96MT3 831 aaPredicted RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 RPRD1AQ96P16 312 aaPredicted RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 HAPLN3Q96S86 360 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 PRMT1Q99873 361 aaKnown RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 NCAPGQ9BPX3 1015 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 SNRNP25Q9BV90 132 aaKnown RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 DHX35Q9H5Z1 703 aaKnown RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 SLC2A4RGQ9NR83 387 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 KLHL11Q9NVR0 708 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 TRMT1Q9NXH9 659 aaKnown RBP12.31□□□□□ -0.44
CUX1-210ENST00000497815 STIM2Q9P246 746 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 STOML2Q9UJZ1 356 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 FBXL21Q9UKT6 434 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 CA14Q9ULX7 337 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 AP4E1Q9UPM8 1137 aa12.31□□□□□ -0.44
CUX1-210ENST00000497815 GRID2IPA4D2P6 1211 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 FAM72CH0Y354 149 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 ZSCAN12O43309 604 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 CREB3O43889 395 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 TBL1XO60907 577 aa12.3□□□□□ -0.44
CUX1-210ENST00000497815 PALMO75781 387 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms