RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PM20D1Q6GTS8 502 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 MPP5Q8N3R9 675 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 EDEM1Q92611 657 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 ALKBH8Q96BT7 664 aaKnown RBP21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 PRDM12Q9H4Q4 367 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 SQORQ9Y6N5 450 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 PATJQ8NI35 1801 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 TRDMT1O14717 391 aaKnown RBP21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 PPP1R12AO14974 1030 aaPredicted RBP21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 OPHN1O60890 802 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 SUN1O94901 812 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 LVRNQ6Q4G3 990 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 UNC5AQ6ZN44 842 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 RNF180Q86T96 592 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 LRRTM3Q86VH5 581 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 TP53INP2Q8IXH6 220 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 COLGALT1Q8NBJ5 622 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 KLF6Q99612 283 aaPredicted RBP21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 EBNA1BP2Q99848 306 aaKnown RBP21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 DMAP1Q9NPF5 467 aaPredicted RBP21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 F8W810 466 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 GOLGA8RI6L899 631 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 INPPL1O15357 1258 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 CABYRO75952 493 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 STK10O94804 968 aaKnown RBP21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 APOEP02649 317 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 ERCC2P18074 760 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 YY1P25490 414 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 WASHC5Q12768 1159 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 MAP3K21Q5TCX8 1036 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 HHATQ5VTY9 493 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 OVOS1Q6IE37 1185 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 TRPM8Q7Z2W7 1104 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 SLC26A11Q86WA9 606 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 SPOCK2Q92563 424 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 SUSD3Q96L08 255 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 COLEC11Q9BWP8 271 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 PRKAG3Q9UGI9 489 aa21.76■■□□□ 1.07
CCDC88B-208ENST00000492980 CXorf49A8MYA2 514 aaPredicted RBP21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 F5H423 210 aaPredicted RBP21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 AOC2O75106 756 aa21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 F9P00740 461 aa21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 MT-ND3P03897 115 aa21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 HCAR3P49019 387 aa21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 TPI1P60174 286 aa21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 DCLRE1AQ6PJP8 1040 aa21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 PPM1NQ8N819 430 aa21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 CCNYQ8ND76 341 aa21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 SERAC1Q96JX3 654 aa21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 EIF2B3Q9NR50 452 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 SMYD2Q9NRG4 433 aa21.75■■□□□ 1.07
CCDC88B-208ENST00000492980 SCTRP47872 440 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 CXCR3P49682 368 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 CDK16Q00536 496 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 DNAJC3Q13217 504 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 ARL13BQ3SXY8 428 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 FAM47EQ6ZV65 393 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 LRRC6Q86X45 466 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 SCML4Q8N228 414 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 TCP10LQ8TDR4 215 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 GRAMD1AQ96CP6 724 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 TRIM56Q9BRZ2 755 aaKnown RBP21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 CEP41Q9BYV8 373 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 PITPNM3Q9BZ71 974 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 ABCF3Q9NUQ8 709 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 ARL2BPQ9Y2Y0 163 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 MAD1L1Q9Y6D9 718 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 TM9SF1O15321 606 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 FAM155BO75949 473 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 CKBP12277 381 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 SARNPP82979 210 aaKnown RBP21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 BSPRYQ5W0U4 402 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 SH2D5Q6ZV89 423 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 CTAGE3PQ8IX95 158 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 THEM5Q8N1Q8 247 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 GSDMBQ8TAX9 411 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 FERMT1Q9BQL6 677 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 SEPT10Q9P0V9 454 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 SRRDQ9UH36 339 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 ZNF180Q9UJW8 692 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 RAD54BQ9Y620 910 aa21.74■■□□□ 1.07
CCDC88B-208ENST00000492980 MLNP12872 115 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 TYMPP19971 482 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 ADRA1DP25100 572 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 NOGQ13253 232 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 TTC39BQ5VTQ0 682 aaPredicted RBP21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 TRAF7Q6Q0C0 670 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 RTN4RL1Q86UN2 441 aaPredicted RBP21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 TAC4Q86UU9 113 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 ZNF567Q8N184 647 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 PDCD7Q8N8D1 485 aaKnown RBP21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 WDCPQ9H6R7 721 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 RGS18Q9NS28 235 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 PCDHA11Q9Y5I1 949 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 B4GALT3O60512 393 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 PSMB4P28070 264 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 SLC18A2Q05940 514 aa21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 MAPRE1Q15691 268 aaKnown RBP21.73■■□□□ 1.07
CCDC88B-208ENST00000492980 PARP6Q2NL67 630 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms