RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 EPAS1Q99814 870 aa11.88□□□□□ -0.51
C9orf3-220ENST00000489318 MAK16Q9BXY0 300 aaKnown RBP11.88□□□□□ -0.51
C9orf3-220ENST00000489318 RAB17Q9H0T7 212 aa11.88□□□□□ -0.51
C9orf3-220ENST00000489318 PRO3102Q9H379 93 aa11.88□□□□□ -0.51
C9orf3-220ENST00000489318 MAN1C1Q9NR34 630 aa11.88□□□□□ -0.51
C9orf3-220ENST00000489318 OR12D3Q9UGF7 316 aa11.88□□□□□ -0.51
C9orf3-220ENST00000489318 DNMT3LQ9UJW3 386 aa11.88□□□□□ -0.51
C9orf3-220ENST00000489318 DNPEPQ9ULA0 475 aa11.88□□□□□ -0.51
C9orf3-220ENST00000489318 RAD54BQ9Y620 910 aa11.88□□□□□ -0.51
C9orf3-220ENST00000489318 CHD5Q8TDI0 1954 aa11.88□□□□□ -0.51
C9orf3-220ENST00000489318 IGLV3-10A0A075B6K4 115 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 ZSCAN5CA6NGD5 496 aaPredicted RBP11.87□□□□□ -0.51
C9orf3-220ENST00000489318 SOBPA7XYQ1 873 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 MCF2LO15068 1137 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 FGF10O15520 208 aaPredicted RBP11.87□□□□□ -0.51
C9orf3-220ENST00000489318 FGF19O95750 216 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 GAS8O95995 478 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 CDC25CP30307 473 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 KCNJ1P48048 391 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 DRG2P55039 364 aaKnown RBP11.87□□□□□ -0.51
C9orf3-220ENST00000489318 MLLT6P55198 1093 aaPredicted RBP11.87□□□□□ -0.51
C9orf3-220ENST00000489318 SLC7A5Q01650 507 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 XRCC4Q13426 336 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 CUL1Q13616 776 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 KCNC3Q14003 757 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 TAF12Q16514 161 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 C5orf22Q49AR2 442 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 PPM1LQ5SGD2 360 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 PIK3R6Q5UE93 754 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 DUPD1Q68J44 220 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 GAREM2Q75VX8 874 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 IFT20Q8IY31 132 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 CCDC105Q8IYK2 499 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 ELMOD1Q8N336 334 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 ALLCQ8N6M5 410 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 ATP6V0D2Q8N8Y2 350 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 LEMD2Q8NC56 503 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 HNRNPLLQ8WVV9 542 aaKnown RBP11.87□□□□□ -0.51
C9orf3-220ENST00000489318 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.87□□□□□ -0.51
C9orf3-220ENST00000489318 RNF34Q969K3 372 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 AZIN2Q96A70 460 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 HAUS1Q96CS2 278 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 RTP4Q96DX8 246 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 ZFRQ96KR1 1074 aaKnown RBP11.87□□□□□ -0.51
C9orf3-220ENST00000489318 PRMT1Q99873 361 aaKnown RBP11.87□□□□□ -0.51
C9orf3-220ENST00000489318 ERP44Q9BS26 406 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 TRIM51Q9BSJ1 452 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 ETNK2Q9NVF9 386 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 ZDHHC7Q9NXF8 308 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 PPARGC1AQ9UBK2 798 aaKnown RBP11.87□□□□□ -0.51
C9orf3-220ENST00000489318 DPP7Q9UHL4 492 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 HS3ST4Q9Y661 456 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 NYNRINQ9P2P1 1898 aaKnown RBP11.87□□□□□ -0.51
C9orf3-220ENST00000489318 C2orf16Q68DN1 1984 aa11.87□□□□□ -0.51
C9orf3-220ENST00000489318 SLC12A8A0AV02 714 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 CFAP69A5D8W1 941 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 C2orf78A6NCI8 922 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 WASH4PA8MWX3 477 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 CREB3O43889 395 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 MFSD11O43934 449 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 ZNF189O75820 626 aaPredicted RBP11.86□□□□□ -0.51
C9orf3-220ENST00000489318 LATS1O95835 1130 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 RBP3P10745 1247 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 EPCAMP16422 314 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 ERCC2P18074 760 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 AMPD1P23109 780 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 ECHS1P30084 290 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 MRPS25P82663 173 aaKnown RBP11.86□□□□□ -0.51
C9orf3-220ENST00000489318 COG7P83436 770 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 SMAD3P84022 425 aaKnown RBP11.86□□□□□ -0.51
C9orf3-220ENST00000489318 GUCY2DQ02846 1103 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 GBE1Q04446 702 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 SNX1Q13596 522 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 DUSP6Q16828 381 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 MS4A13Q5J8X5 152 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 FBXO38Q6PIJ6 1188 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 NPNTQ6UXI9 565 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 ADGRD2Q7Z7M1 963 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 MIB1Q86YT6 1006 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 UNC45BQ8IWX7 931 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 CCHCR1Q8TD31 782 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 MICAL1Q8TDZ2 1067 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 CASKIN2Q8WXE0 1202 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 TBC1D31Q96DN5 1066 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 QKIQ96PU8 341 aaKnown RBP eCLIP11.86□□□□□ -0.51
C9orf3-220ENST00000489318 CDCA3Q99618 268 aaPredicted RBP11.86□□□□□ -0.51
C9orf3-220ENST00000489318 FAM118BQ9BPY3 351 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 KLF16Q9BXK1 252 aaPredicted RBP11.86□□□□□ -0.51
C9orf3-220ENST00000489318 FAM129AQ9BZQ8 928 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 SLC28A3Q9HAS3 691 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 EPB41L5Q9HCM4 733 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 ASAH2Q9NR71 780 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 FAM114A2Q9NRY5 505 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 ARGLU1Q9NWB6 273 aaPredicted RBP11.86□□□□□ -0.51
C9orf3-220ENST00000489318 DTLQ9NZJ0 730 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 SAE1Q9UBE0 346 aaPredicted RBP11.86□□□□□ -0.51
C9orf3-220ENST00000489318 XPO7Q9UIA9 1087 aaKnown RBP11.86□□□□□ -0.51
C9orf3-220ENST00000489318 STOML2Q9UJZ1 356 aa11.86□□□□□ -0.51
C9orf3-220ENST00000489318 UTP11Q9Y3A2 253 aaKnown RBP11.86□□□□□ -0.51
C9orf3-220ENST00000489318 HCFC2Q9Y5Z7 792 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms