RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 MAP3K13O43283 966 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 IGLV3-25P01717 112 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 HLA-FP30511 346 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 POLR2FP61218 127 aaKnown RBP21.21■□□□□ 0.99
HDAC4-209ENST00000487617 STARD3Q14849 445 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 RSPO4Q2I0M5 234 aaPredicted RBP21.21■□□□□ 0.99
HDAC4-209ENST00000487617 PMS2CLQ68D20 193 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 TMEM215Q68D42 235 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 OLFML1Q6UWY5 402 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 PRR23CQ6ZRP0 262 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 NOP9Q86U38 636 aaKnown RBP21.21■□□□□ 0.99
HDAC4-209ENST00000487617 AOPEPQ8N6M6 819 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 HJURPQ8NCD3 748 aaPredicted RBP21.21■□□□□ 0.99
HDAC4-209ENST00000487617 WFIKKN2Q8TEU8 576 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 SORCS1Q8WY21 1168 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 PCMTD1Q96MG8 357 aaPredicted RBP21.21■□□□□ 0.99
HDAC4-209ENST00000487617 NUCKS1Q9H1E3 243 aaKnown RBP21.21■□□□□ 0.99
HDAC4-209ENST00000487617 CD248Q9HCU0 757 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 CALCOCO1Q9P1Z2 691 aa21.21■□□□□ 0.99
HDAC4-209ENST00000487617 MYO18AQ92614 2054 aaKnown RBP21.2■□□□□ 0.99
HDAC4-209ENST00000487617 SDK1Q7Z5N4 2213 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 EML5Q05BV3 1969 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 SYNJ2BP-COX16A0A087WUM0 186 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 TYW5A2RUC4 315 aaKnown RBP21.2■□□□□ 0.98
HDAC4-209ENST00000487617 LGALS16A8MUM7 142 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 NDUFV2P19404 249 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 CDH5P33151 784 aaPredicted RBP21.2■□□□□ 0.98
HDAC4-209ENST00000487617 MPLP40238 635 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 IL12RB1P42701 662 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 SLC6A3Q01959 620 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 CREB5Q02930 508 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 ZNF234Q14588 700 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 NCAPHQ15003 741 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 SYCP1Q15431 976 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 MAP7D1Q3KQU3 841 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 MS4A13Q5J8X5 152 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 CAVIN1Q6NZI2 390 aaKnown RBP21.2■□□□□ 0.98
HDAC4-209ENST00000487617 CHST9Q7L1S5 443 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 FRMD1Q8N878 549 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 DDX1Q92499 740 aaKnown RBP21.2■□□□□ 0.98
HDAC4-209ENST00000487617 PRICKLE1Q96MT3 831 aaPredicted RBP21.2■□□□□ 0.98
HDAC4-209ENST00000487617 NAT10Q9H0A0 1025 aaKnown RBP21.2■□□□□ 0.98
HDAC4-209ENST00000487617 NLRC4Q9NPP4 1024 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 DDIT4Q9NX09 232 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 COX16Q9P0S2 106 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 SLC12A6Q9UHW9 1150 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 XPO7Q9UIA9 1087 aaKnown RBP21.2■□□□□ 0.98
HDAC4-209ENST00000487617 GGA2Q9UJY4 613 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 SIK3Q9Y2K2 1263 aa21.2■□□□□ 0.98
HDAC4-209ENST00000487617 FAM170AA1A519 330 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 EPHB6O15197 1021 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 FOXD2O60548 495 aaPredicted RBP21.19■□□□□ 0.98
HDAC4-209ENST00000487617 DAB1O75553 588 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 GFPT2O94808 682 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 ZNF806P0C7X5 589 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 PABPC1P11940 636 aaKnown RBP21.19■□□□□ 0.98
HDAC4-209ENST00000487617 ZNF18P17022 549 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 RPS24P62847 133 aaKnown RBP21.19■□□□□ 0.98
HDAC4-209ENST00000487617 UBXN1Q04323 297 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 ENPP2Q13822 863 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 PUM1Q14671 1186 aaKnown RBP eCLIP21.19■□□□□ 0.98
HDAC4-209ENST00000487617 ANO6Q4KMQ2 910 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 SLC26A9Q7LBE3 791 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 CHSY1Q86X52 802 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 ERICH1Q86X53 443 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 ZDHHC17Q8IUH5 632 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 MFN1Q8IWA4 741 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 AHI1Q8N157 1196 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.19■□□□□ 0.98
HDAC4-209ENST00000487617 ATP6V0D2Q8N8Y2 350 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 ZNF557Q8N988 423 aaPredicted RBP21.19■□□□□ 0.98
HDAC4-209ENST00000487617 WFDC5Q8TCV5 224 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 EPS8L1Q8TE68 723 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 RNF34Q969K3 372 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 MYEOVQ96EZ4 313 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 BTN2A3PQ96KV6 586 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.19■□□□□ 0.982e-7■■■■□ 24.4
HDAC4-209ENST00000487617 MBD1Q9UIS9 605 aaPredicted RBP21.19■□□□□ 0.98
HDAC4-209ENST00000487617 CDV3Q9UKY7 258 aaKnown RBP21.19■□□□□ 0.98
HDAC4-209ENST00000487617 DAAM1Q9Y4D1 1078 aa21.19■□□□□ 0.98
HDAC4-209ENST00000487617 SYNCRIPO60506 623 aaKnown RBP21.18■□□□□ 0.98
HDAC4-209ENST00000487617 LSM8O95777 96 aaKnown RBP21.18■□□□□ 0.98
HDAC4-209ENST00000487617 MMEP08473 750 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 SLC2A3P11169 496 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 SDHBP21912 280 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 SOX5P35711 763 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 DHPSP49366 369 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-209ENST00000487617 EIF4EBP2Q13542 120 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-209ENST00000487617 SF3A2Q15428 464 aaKnown RBP21.18■□□□□ 0.98
HDAC4-209ENST00000487617 FUT11Q495W5 492 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 RAP1GAP2Q684P5 730 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 RNF43Q68DV7 783 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 SERPINA13PQ6UXR4 307 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 LPCAT2Q7L5N7 544 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 CCDC117Q8IWD4 279 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-209ENST00000487617 LGI2Q8N0V4 545 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 CFAP52Q8N1V2 620 aa21.18■□□□□ 0.98
HDAC4-209ENST00000487617 C12orf50Q8NA57 414 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-209ENST00000487617 ZNF397Q8NF99 534 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-209ENST00000487617 NEK11Q8NG66 645 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms