RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 DUSP6Q16828 381 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 CCDC153Q494R4 210 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 VWA3BQ502W6 1294 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 PDCD4Q53EL6 469 aaKnown RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 ZFYVE27Q5T4F4 411 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 HS2ST1Q7LGA3 356 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 SCAIQ8N9R8 606 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 LILRB1Q8NHL6 650 aaPredicted RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 STARD8Q92502 1023 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 ZNF516Q92618 1163 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 SPATA17Q96L03 361 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 LRRC37BQ96QE4 947 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 C11orf84Q9BUA3 381 aaPredicted RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 ROPN1BQ9BZX4 212 aaPredicted RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 NKX2-4Q9H2Z4 354 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 ROPN1Q9HAT0 212 aaPredicted RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 TIMMDC1Q9NPL8 285 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 MSRAQ9UJ68 235 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 NCANO14594 1321 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 DCTN3O75935 186 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 CSPG5O95196 566 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 SERPING1P05155 500 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 TKTP29401 623 aaKnown RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 SLC11A1P49279 550 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 SERPINB8P50452 374 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 DRG2P55039 364 aaKnown RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 SLC18A3Q16572 532 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 MYLK3Q32MK0 819 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 ARL13BQ3SXY8 428 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 ANKRD40Q6AI12 368 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 OTOP2Q7RTS6 562 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 SLC38A6Q8IZM9 456 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 ZBTB45Q96K62 511 aaPredicted RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 CEP44Q9C0F1 390 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 S1PR5Q9H228 398 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 EURLQ9NYK6 297 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 AGO2Q9UKV8 859 aaKnown RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 E9PBE3 544 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 HGSO14964 777 aaPredicted RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 ZC3H11AO75152 810 aaKnown RBP eCLIP7.93□□□□□ -1.14
USP4-211ENST00000485450 KRT36O76013 467 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 VNN2O95498 520 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 FGFR1P11362 822 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 AFF1P51825 1210 aaKnown RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 EPHA5P54756 1037 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 ADRM1Q16186 407 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 ZACNQ401N2 412 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 ACSBG2Q5FVE4 666 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 ZBTB41Q5SVQ8 909 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 RFWD3Q6PCD5 774 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 ZDHHC24Q6UX98 284 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 TRIM59Q8IWR1 403 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 ALDH16A1Q8IZ83 802 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 BBS5Q8N3I7 341 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 FIBCD1Q8N539 461 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 LRRC57Q8N9N7 239 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 MGARPQ8TDB4 240 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 SUSD6Q92537 303 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 GFM2Q969S9 779 aaKnown RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 ACAP3Q96P50 834 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 TRIM51Q9BSJ1 452 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 ZNF576Q9H609 170 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 TRPC7Q9HCX4 862 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 TOPORSQ9NS56 1045 aaPredicted RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 IL37Q9NZH6 218 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 MTRRQ9UBK8 725 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 UBQLN1Q9UMX0 589 aaKnown RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 STARD13Q9Y3M8 1113 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 CLDN3O15551 220 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 VNN1O95497 513 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 CPA3P15088 417 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 WARSP23381 471 aaKnown RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 TNFSF9P41273 254 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 NEK3P51956 506 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 EIF2B5Q13144 721 aaKnown RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 ADGRE1Q14246 886 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 CNGA3Q16281 694 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 PCSK7Q16549 785 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 CYP4A22Q5TCH4 519 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 C9orf57Q5W0N0 161 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 KCNT2Q6UVM3 1135 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 ZNF280BQ86YH2 543 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 SCML4Q8N228 414 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 TOP6BLQ8N6T0 577 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 EFHBQ8N7U6 833 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 C3orf58Q8NDZ4 430 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 C2orf15Q8WU43 125 aaKnown RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 PTCD2Q8WV60 388 aaKnown RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 DGCR14Q96DF8 476 aaKnown RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 PHF12Q96QT6 1004 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 TCF12Q99081 682 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 RTP3Q9BQQ7 232 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 ADPGKQ9BRR6 497 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 DRC3Q9H069 523 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 MMRN2Q9H8L6 949 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 AAASQ9NRG9 546 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 SNTG2Q9NY99 539 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 DKK3Q9UBP4 350 aa7.93□□□□□ -1.14
USP4-211ENST00000485450 TTC7AQ9ULT0 858 aaPredicted RBP7.93□□□□□ -1.14
USP4-211ENST00000485450 C19orf67A6NJJ6 358 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms