RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 KAT5Q92993 513 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 KREMEN1Q96MU8 473 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 ZSWIM1Q9BR11 485 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 ZDHHC5Q9C0B5 715 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 CIPCQ9C0C6 399 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 MKRN2Q9H000 416 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 INTS2Q9H0H0 1204 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 WSB2Q9NYS7 404 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 KIAA1468Q9P260 1216 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 PLA2G4CQ9UP65 541 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 TLR6Q9Y2C9 796 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 ATXN2Q99700 1313 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 NYNRINQ9P2P1 1898 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 WASH3PC4AMC7 463 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 BIN1O00499 593 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 ARHGAP33O14559 1287 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 MSI1O43347 362 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 ACSL4O60488 711 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 CFIP05156 583 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 ATP5BP06576 529 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 EPHX1P07099 455 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 ACADMP11310 421 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 PABPC1P11940 636 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 RGS7P49802 495 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 COPAP53621 1224 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 TBX4P57082 545 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 ZBTB16Q05516 673 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 MTA1Q13330 715 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 SLC14A1Q13336 389 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 CAMK2GQ13555 558 aaPredicted RBP12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 PIK3R6Q5UE93 754 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 TMEM215Q68D42 235 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 HDDC3Q8N4P3 179 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 HJURPQ8NCD3 748 aaPredicted RBP12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 OR2T3Q8NH03 318 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 DNASE2BQ8WZ79 361 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 SIPA1Q96FS4 1042 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 MED15Q96RN5 788 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 NUP58Q9BVL2 599 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 TMEM245Q9H330 911 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 GGA2Q9UJY4 613 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 CLEC4EQ9ULY5 219 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 USP24Q9UPU5 2620 aa12.62□□□□□ -0.39
SQSTM1-207ENST00000481335 OPHN1O60890 802 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 GADD45BO75293 160 aaPredicted RBP12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 GABBR2O75899 941 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 ASLP04424 464 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 DLDP09622 509 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 KRT5P13647 590 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 PRKCHP24723 683 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 GNA15P30679 374 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 TPMTP51580 245 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 STX17P56962 302 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 ZNF252P-AS1Q0IIN9 211 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 SEMA3BQ13214 749 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 FAM133BQ5BKY9 247 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 TRIM65Q6PJ69 517 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 CHST9Q7L1S5 443 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 TMEM110Q86TL2 294 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 ADIPOR2Q86V24 386 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 CCDC117Q8IWD4 279 aaPredicted RBP12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 RGL4Q8IZJ4 473 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 MLKLQ8NB16 471 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 KDM1BQ8NB78 822 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 DQX1Q8TE96 717 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 FAM149B1Q96BN6 582 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 TOE1Q96GM8 510 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 SLC39A13Q96H72 371 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 SLC4A5Q9BY07 1137 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 UBE2TQ9NPD8 197 aaPredicted RBP12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 ABCB8Q9NUT2 735 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 DNAAF2Q9NVR5 837 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 APEX2Q9UBZ4 518 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 SCML1Q9UN30 329 aa12.61□□□□□ -0.39
SQSTM1-207ENST00000481335 A0A1B0GTW7 788 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 MEI4A8MW99 385 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 APOEP02649 317 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 GLI1P08151 1106 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 POLR2EP19388 210 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 MAPK8P45983 427 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 SNX16P57768 344 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 ARID5BQ14865 1188 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 UAP1L1Q3KQV9 507 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 FNDC3BQ53EP0 1204 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 MBLAC2Q68D91 279 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 GBP6Q6ZN66 633 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 PIP4P1Q86T03 277 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 MFN1Q8IWA4 741 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 MINDY1Q8N5J2 469 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 FIBINQ8TAL6 211 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 CLEC4CQ8WTT0 213 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 ZNF606Q8WXB4 792 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 FCRL2Q96LA5 508 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 SLC6A17Q9H1V8 727 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 THAP9Q9H5L6 903 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 POPDC2Q9HBU9 364 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 ST7Q9NRC1 585 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 ASNSD1Q9NWL6 643 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 SUN2Q9UH99 717 aa12.6□□□□□ -0.39
SQSTM1-207ENST00000481335 NUMA1Q14980 2115 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms