RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 TTC17Q96AE7 1141 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 TMEM237Q96Q45 408 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 MANSC1Q9H8J5 431 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 KRT38O76015 456 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 RAB27AP51159 221 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 PARP6Q2NL67 630 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 NBPF20Q3BBV1 942 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 FAM47EQ6ZV65 393 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 SERINC5Q86VE9 423 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 TAB3Q8N5C8 712 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-212ENST00000477970 RAET1EQ8TD07 263 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 INPP5DQ92835 1189 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 CFAP36Q96G28 342 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 DDX43Q9NXZ2 648 aaKnown RBP12.6□□□□□ -0.39
PTPRF-212ENST00000477970 MFSD11O43934 449 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 ZNF623O75123 536 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 BEST1O76090 585 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 CYP11A1P05108 521 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 THP07101 528 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 TROVE2P10155 538 aaKnown RBP eCLIP12.59□□□□□ -0.39
PTPRF-212ENST00000477970 CYBAP13498 195 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 GRK4P32298 578 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 FLT3LGP49771 235 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 DCAF6Q58WW2 860 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 MDH1BQ5I0G3 518 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 ICE2Q659A1 982 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 PDZD4Q76G19 769 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-212ENST00000477970 FAM35AQ86V20 835 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 SPOCK2Q92563 424 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 SYT15Q9BQS2 421 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 SLC17A7Q9P2U7 560 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 ST3GAL5Q9UNP4 418 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 PTPRDP23468 1912 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 HHLA1C9JL84 531 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 TRAFD1O14545 582 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-212ENST00000477970 ATP2C2O75185 946 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 F9P00740 461 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 FYNP06241 537 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 CYP2B6P20813 491 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 TKTL1P51854 596 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 DEUP1Q05D60 604 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 RFX8Q6ZV50 586 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 FAM131BQ86XD5 332 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 ACMSDQ8TDX5 336 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 LRMDAQ9H2I8 198 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 WDR6Q9NNW5 1121 aaKnown RBP12.59□□□□□ -0.39
PTPRF-212ENST00000477970 SLCO1B3Q9NPD5 702 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 KRT82Q9NSB4 513 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 CHKBQ9Y259 395 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 GPR182O15218 404 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 DNAJC6O75061 913 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 RFPL1O75677 317 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 ADRA1BP35368 520 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 FAM91A1Q658Y4 838 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 PYROXD2Q8N2H3 581 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 TRPV1Q8NER1 839 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 MRRFQ96E11 262 aaKnown RBP12.59□□□□□ -0.39
PTPRF-212ENST00000477970 OXNAD1Q96HP4 312 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-212ENST00000477970 LRRC37BQ96QE4 947 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 SMOQ99835 787 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 TRIM62Q9BVG3 475 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 SAR1AQ9NR31 198 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 SMYD2Q9NRG4 433 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 FBXW11Q9UKB1 542 aa12.59□□□□□ -0.39
PTPRF-212ENST00000477970 M0QYT0 321 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 INPPL1O15357 1258 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 PCSK1P29120 753 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 ZNF33AQ06730 810 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 NIPAL4Q0D2K0 466 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 FNDC1Q4ZHG4 1894 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-212ENST00000477970 MAP3K21Q5TCX8 1036 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 FAXCQ5TGI0 409 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 NLRC5Q86WI3 1866 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 FAM149B1Q96BN6 582 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 STAMBPL1Q96FJ0 436 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 SMARCD1Q96GM5 515 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 MYLK2Q9H1R3 596 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 PLLPQ9Y342 182 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 SDR42E2A6NKP2 422 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 CXorf49A8MYA2 514 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-212ENST00000477970 TRIM49D1C9J1S8 452 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 CLDN5O00501 218 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 COPEO14579 308 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 BIRC5O15392 142 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 MTSS1O43312 755 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 WFS1O76024 890 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 ATP6V1G2O95670 118 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 PYGBP11216 843 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 PGAM1P18669 254 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 SLC8A1P32418 973 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 UPP1Q16831 310 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 PM20D1Q6GTS8 502 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 BHLHA9Q7RTU4 235 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 KLHDC8BQ8IXV7 354 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 PPM1NQ8N819 430 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 COLGALT1Q8NBJ5 622 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 P2RY11Q96G91 374 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 ZFP42Q96MM3 310 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 MED10Q9BTT4 135 aa12.58□□□□□ -0.4
PTPRF-212ENST00000477970 PIGVQ9NUD9 493 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms