RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 HS1BP3Q53T59 392 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 SHQ1Q6PI26 577 aaKnown RBP4.54□□□□□ -1.68
VPS13D-207ENST00000476169 LRRC55Q6ZSA7 311 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 Q6ZSN1 163 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 MICALCLQ6ZW33 695 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 CEP57L1Q8IYX8 460 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 TMEM132CQ8N3T6 1108 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 FSTL5Q8N475 847 aaPredicted RBP4.54□□□□□ -1.68
VPS13D-207ENST00000476169 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.54□□□□□ -1.68
VPS13D-207ENST00000476169 AVL9Q8NBF6 648 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 MBD3L2Q8NHZ7 208 aaPredicted RBP4.54□□□□□ -1.68
VPS13D-207ENST00000476169 SCFD2Q8WU76 684 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 ZDHHC12Q96GR4 267 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 HIST1H2AAQ96QV6 131 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 DESI2Q9BSY9 194 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 INTS2Q9H0H0 1204 aaKnown RBP4.54□□□□□ -1.68
VPS13D-207ENST00000476169 TTYH1Q9H313 450 aaPredicted RBP4.54□□□□□ -1.68
VPS13D-207ENST00000476169 MROH8Q9H579 483 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 RABEP2Q9H5N1 569 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 STN1Q9H668 368 aaKnown RBP4.54□□□□□ -1.68
VPS13D-207ENST00000476169 IL21RQ9HBE5 538 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 TMLHEQ9NVH6 421 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 MTRRQ9UBK8 725 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 VPS51Q9UID3 782 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 RASAL2Q9UJF2 1139 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 SERTAD3Q9UJW9 196 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 PCDHGB5Q9Y5G0 923 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 NOX1Q9Y5S8 564 aa4.54□□□□□ -1.68
VPS13D-207ENST00000476169 GTPBP10A4D1E9 387 aaKnown RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 OTOL1A6NHN0 477 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 AGAP14A8MT82 685 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 AHRRA9YTQ3 701 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 PATE3B3GLJ2 98 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 ZNF623O75123 536 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 ZFPL1O95159 310 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 C8AP07357 584 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 ATP6V1B1P15313 513 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 RBL1P28749 1068 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 EPHA3P29320 983 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 UQCRC1P31930 480 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 CTCFP49711 727 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 MTHFSP49914 203 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 UBXN2AP68543 259 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 TBL3Q12788 808 aaKnown RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 RRP1BQ14684 758 aaKnown RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 MED22Q15528 200 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 SPDYE7PQ495Y7 208 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 DEPDC1Q5TB30 811 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 B3GNTL1Q67FW5 361 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 ANKRD40Q6AI12 368 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 CYP20A1Q6UW02 462 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 RASGRP2Q7LDG7 609 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 KRT27Q7Z3Y8 459 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 TRABD2AQ86V40 505 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 C1QL4Q86Z23 238 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 CEP97Q8IW35 865 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 FRMD1Q8N878 549 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 Q8TCH9 128 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 NOC3LQ8WTT2 800 aaKnown RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 SLC22A17Q8WUG5 538 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 OSCP1Q8WVF1 389 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 FAM136AQ96C01 138 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 MCRS1Q96EZ8 462 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 REXO5Q96IC2 774 aaKnown RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 ZBTB45Q96K62 511 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 OSBPL9Q96SU4 736 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 EYA3Q99504 573 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 GPATCH1Q9BRR8 931 aaKnown RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 PCDHB16Q9NRJ7 776 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 HCFC1R1Q9NWW0 138 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 TAB2Q9NYJ8 693 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 SEL1LQ9UBV2 794 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 LIMA1Q9UHB6 759 aaKnown RBP4.53□□□□□ -1.68
VPS13D-207ENST00000476169 ZNF112Q9UJU3 913 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 SSX2IPQ9Y2D8 614 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 MAP3K2Q9Y2U5 619 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 SNX14Q9Y5W7 946 aa4.53□□□□□ -1.68
VPS13D-207ENST00000476169 BTBD11A6QL63 1104 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 GRXCR1A8MXD5 290 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 ADM5C9JUS6 153 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 AGPSO00116 658 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 RNASET2O00584 256 aaKnown RBP4.52□□□□□ -1.69
VPS13D-207ENST00000476169 TULP3O75386 442 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 TUBB4AP04350 444 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 CYP21A2P08686 494 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 NR2F1P10589 423 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 MSH2P43246 934 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 GSTM5P46439 218 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 CPA2P48052 419 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 GATMP50440 423 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 CDH15P55291 814 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 GOLGA8FQ08AF8 430 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 NEXNQ0ZGT2 675 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 CYP2A13Q16696 494 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 SLC10A5Q5PT55 438 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 CLEC9AQ6UXN8 241 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 ADGRG6Q86SQ4 1221 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 ABRAQ8N0Z2 381 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 OR8H3Q8N146 312 aa4.52□□□□□ -1.69
VPS13D-207ENST00000476169 FAM109AQ8N4B1 249 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms