RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 SCUBE3Q8IX30 993 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 DEFB119Q8N690 84 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 CEP76Q8TAP6 659 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 WFDC5Q8TCV5 224 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 ZNF606Q8WXB4 792 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 GOLGA1Q92805 767 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 TMA16Q96EY4 203 aaKnown RBP16.96■□□□□ 0.31
COL9A3-208ENST00000469802 SLC39A13Q96H72 371 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 PRICKLE1Q96MT3 831 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-208ENST00000469802 SERPINB11Q96P15 392 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 CRACR2AQ9BSW2 395 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 MIS12Q9H081 205 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 TMEM245Q9H330 911 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 ACP6Q9NPH0 428 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 ABCB8Q9NUT2 735 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 CHMP5Q9NZZ3 219 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 TLR6Q9Y2C9 796 aa16.96■□□□□ 0.31
COL9A3-208ENST00000469802 PCNX2A6NKB5 2137 aa16.96■□□□□ 0.3
COL9A3-208ENST00000469802 PAPSS1O43252 624 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-208ENST00000469802 MED7O43513 233 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 LETM1O95202 739 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-208ENST00000469802 SERPINF2P08697 491 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 PABPC1P11940 636 aaKnown RBP16.95■□□□□ 0.3
COL9A3-208ENST00000469802 SLC9A1P19634 815 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 CSRP1P21291 193 aaKnown RBP16.95■□□□□ 0.3
COL9A3-208ENST00000469802 CD6P30203 668 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 GNA15P30679 374 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 SLC11A2P49281 568 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 NOVA1P51513 510 aaKnown RBP16.95■□□□□ 0.3
COL9A3-208ENST00000469802 SHC2P98077 582 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 CAMK2GQ13555 558 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-208ENST00000469802 PTPRNQ16849 979 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 SMYD5Q6GMV2 418 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 RFWD3Q6PCD5 774 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 GJB7Q6PEY0 223 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 SERPINA13PQ6UXR4 307 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 RABEPKQ7Z6M1 372 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 TMEM110Q86TL2 294 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 TMPRSS6Q8IU80 811 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 AHI1Q8N157 1196 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 MLKLQ8NB16 471 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 SHC3Q92529 594 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 LMLNQ96KR4 655 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 FAM81BQ96LP2 452 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 ITM2CQ9NQX7 267 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 ST7Q9NRC1 585 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 WSB2Q9NYS7 404 aaPredicted RBP16.95■□□□□ 0.3
COL9A3-208ENST00000469802 APEX2Q9UBZ4 518 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 GGA2Q9UJY4 613 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 SLC6A14Q9UN76 642 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 NAALADL1Q9UQQ1 740 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 CEP295Q9C0D2 2601 aa16.95■□□□□ 0.3
COL9A3-208ENST00000469802 USP24Q9UPU5 2620 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 GOLGA6L7A0A1B0GV03 622 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 KCNJ18B7U540 433 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 E5RJQ4 531 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 GIPC1O14908 333 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 SYNCRIPO60506 623 aaKnown RBP16.94■□□□□ 0.3
COL9A3-208ENST00000469802 IGLV3-25P01717 112 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 CFIP05156 583 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 EPHX1P07099 455 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 TPMTP51580 245 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 APBA1Q02410 837 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 PDCLQ13371 301 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 GBP6Q6ZN66 633 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 CHST9Q7L1S5 443 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 TAC4Q86UU9 113 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 HJURPQ8NCD3 748 aaPredicted RBP16.94■□□□□ 0.3
COL9A3-208ENST00000469802 MYEOVQ96EZ4 313 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 TRIM62Q9BVG3 475 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 CLSTN2Q9H4D0 955 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 NFE2L3Q9Y4A8 694 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 CACNA1BQ00975 2339 aa16.94■□□□□ 0.3
COL9A3-208ENST00000469802 THAP12O43422 761 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 TBL1XO60907 577 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 NDUFS2O75306 463 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 HLA-EP13747 358 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 PON1P27169 355 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 CD70P32970 193 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 MAPK8P45983 427 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 EIF4EBP2Q13542 120 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-208ENST00000469802 EXOC3L4Q17RC7 722 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 SH3PXD2AQ5TCZ1 1133 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 SYPL2Q5VXT5 272 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 MBLAC2Q68D91 279 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 ZNF557Q8N988 423 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-208ENST00000469802 OR2T3Q8NH03 318 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 CYB5D2Q8WUJ1 264 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 PRCCQ92733 491 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-208ENST00000469802 FOXJ1Q92949 421 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 FAM149B1Q96BN6 582 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 SIPA1Q96FS4 1042 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 TOE1Q96GM8 510 aaKnown RBP16.93■□□□□ 0.3
COL9A3-208ENST00000469802 SIX2Q9NPC8 291 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 FSCN3Q9NQT6 498 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 AJAP1Q9UKB5 411 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-208ENST00000469802 ANGPTL2Q9UKU9 493 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 TMEM131Q92545 1883 aa16.93■□□□□ 0.3
COL9A3-208ENST00000469802 UPK3BL1B0FP48 263 aa16.92■□□□□ 0.3
COL9A3-208ENST00000469802 UPK3BL2E5RIL1 263 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms