RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 FAM72CH0Y354 149 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 TRAFD1O14545 582 aaPredicted RBP9.21□□□□□ -0.93
SYNE1-217ENST00000466159 KLF11O14901 512 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 HAUS5O94927 633 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 AMHP03971 560 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 FYNP06241 537 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 GM2AP17900 193 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 MGAT1P26572 445 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 PSMB4P28070 264 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 PTPN4P29074 926 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 FDFT1P37268 417 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 RASSF2P50749 326 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 TKTL1P51854 596 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 IRX4P78413 519 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 SARNPP82979 210 aaKnown RBP9.21□□□□□ -0.93
SYNE1-217ENST00000466159 TMPRSS15P98073 1019 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 CDK16Q00536 496 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 ZBTB16Q05516 673 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 MAP2K5Q13163 448 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 OLIG2Q13516 323 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 CHI3L2Q15782 390 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 FAM72AQ5TYM5 149 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 FAM72DQ6L9T8 149 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 BNIPLQ7Z465 357 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 TTC7BQ86TV6 843 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 FAM72BQ86X60 149 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 SIX6OS1Q8N1H7 587 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 ARNTL2Q8WYA1 636 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 E2F7Q96AV8 911 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 SKA1Q96BD8 255 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 MTBPQ96DY7 904 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 PGLYRP2Q96PD5 576 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 MIPEPQ99797 713 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 PRDM12Q9H4Q4 367 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 ANLNQ9NQW6 1124 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 KRT82Q9NSB4 513 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 IL1RAPL1Q9NZN1 696 aa9.21□□□□□ -0.93
SYNE1-217ENST00000466159 RCOR3Q9P2K3 495 aaPredicted RBP9.21□□□□□ -0.93
SYNE1-217ENST00000466159 NKX1-2Q9UD57 310 aaPredicted RBP9.21□□□□□ -0.93
SYNE1-217ENST00000466159 MTO1Q9Y2Z2 717 aaKnown RBP9.21□□□□□ -0.93
SYNE1-217ENST00000466159 C17orf102A2RUQ5 167 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 SDR42E2A6NKP2 422 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 H3BRJ5 948 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 I6L893 689 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-217ENST00000466159 GABRDO14764 452 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 CYP2B6P20813 491 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 LRPAP1P30533 357 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 DEUP1Q05D60 604 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 WASHC5Q12768 1159 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 HSF5Q4G112 596 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-217ENST00000466159 LRRC8BQ6P9F7 803 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 BZW1Q7L1Q6 419 aaKnown RBP9.21□□□□□ -0.94
SYNE1-217ENST00000466159 NUDCD3Q8IVD9 361 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 ZNF567Q8N184 647 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 SLC7A14Q8TBB6 771 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 NSMCE1Q8WV22 266 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 WNT8BQ93098 351 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 PPP1R10Q96QC0 940 aaKnown RBP9.21□□□□□ -0.94
SYNE1-217ENST00000466159 KCNK16Q96T55 309 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 C20orf27Q9GZN8 174 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 DNAI2Q9GZS0 605 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 CRTAC1Q9NQ79 661 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 TMEM30AQ9NV96 361 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 DDX43Q9NXZ2 648 aaKnown RBP9.21□□□□□ -0.94
SYNE1-217ENST00000466159 LNPEPQ9UIQ6 1025 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 NUP205Q92621 2012 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 TSC2P49815 1807 aa9.21□□□□□ -0.94
SYNE1-217ENST00000466159 YJEFN3A6XGL0 299 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 E7ENQ6 273 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 I3L4J1 428 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 KCNK1O00180 336 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 EEF2KO00418 725 aaKnown RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 DIAPH2O60879 1101 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 OPHN1O60890 802 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 ALDH1A2O94788 518 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 IL1BP01584 269 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 KITP10721 976 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 CRHR1P34998 444 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 GLUD2P49448 558 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 CPT1AP50416 773 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 CACNA2D1P54289 1103 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 DPYSQ14117 519 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 STEAP4Q687X5 459 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 CES3Q6UWW8 571 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 ZCCHC23Q6ZST2 131 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 RFX8Q6ZV50 586 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 GPRIN1Q7Z2K8 1008 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 ALYREFQ86V81 257 aaKnown RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 PSTKQ8IV42 348 aaKnown RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 STKLD1Q8NE28 680 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 GSTCDQ8NEC7 633 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 KCTD13Q8WZ19 329 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 PGBD4Q96DM1 585 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 PTCD3Q96EY7 689 aaKnown RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 SENP8Q96LD8 212 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 SLC2A13Q96QE2 648 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 TACO1Q9BSH4 297 aaKnown RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 ULBP1Q9BZM6 244 aa9.2□□□□□ -0.94
SYNE1-217ENST00000466159 TSPYL2Q9H2G4 693 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-217ENST00000466159 SYBUQ9NX95 663 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms