RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CYP2U1Q7Z449 544 aa22.05■■□□□ 1.12
HMGB3-205ENST00000455596 FRMD1Q8N878 549 aa22.05■■□□□ 1.12
HMGB3-205ENST00000455596 C1orf131Q8NDD1 294 aaKnown RBP22.05■■□□□ 1.12
HMGB3-205ENST00000455596 WFIKKN2Q8TEU8 576 aa22.05■■□□□ 1.12
HMGB3-205ENST00000455596 SMOC1Q9H4F8 434 aa22.05■■□□□ 1.12
HMGB3-205ENST00000455596 ANO10Q9NW15 660 aa22.05■■□□□ 1.12
HMGB3-205ENST00000455596 ASNSD1Q9NWL6 643 aa22.05■■□□□ 1.12
HMGB3-205ENST00000455596 MBD1Q9UIS9 605 aaPredicted RBP22.05■■□□□ 1.12
HMGB3-205ENST00000455596 DMXL1Q9Y485 3027 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 TYW5A2RUC4 315 aaKnown RBP22.04■■□□□ 1.12
HMGB3-205ENST00000455596 ZNF217O75362 1048 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 TRUB2O95900 331 aaKnown RBP22.04■■□□□ 1.12
HMGB3-205ENST00000455596 MBD3O95983 291 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 APOEP02649 317 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 GLI1P08151 1106 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 EFHC1Q5JVL4 640 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 CDKAL1Q5VV42 579 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 TMEM215Q68D42 235 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 SLC36A4Q6YBV0 504 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 ZNF557Q8N988 423 aaPredicted RBP22.04■■□□□ 1.12
HMGB3-205ENST00000455596 VPS16Q9H269 839 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 PDCL3Q9H2J4 239 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 ABCB8Q9NUT2 735 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 WDR87Q6ZQQ6 2873 aa22.04■■□□□ 1.12
HMGB3-205ENST00000455596 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 SLC30A4O14863 429 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 MOCS2O96007 188 aaPredicted RBP22.03■■□□□ 1.12
HMGB3-205ENST00000455596 IGLV3-25P01717 112 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 PABPC1P11940 636 aaKnown RBP22.03■■□□□ 1.12
HMGB3-205ENST00000455596 UCHL3P15374 230 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 KRT31Q15323 416 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 TAF5Q15542 800 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 DCAF6Q58WW2 860 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 SPDYCQ5MJ68 293 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 OR6B2Q6IFH4 312 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 C11orf57Q6ZUT1 292 aaPredicted RBP22.03■■□□□ 1.12
HMGB3-205ENST00000455596 CHST9Q7L1S5 443 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 TMEFF1Q8IYR6 380 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 AHI1Q8N157 1196 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.03■■□□□ 1.12
HMGB3-205ENST00000455596 HJURPQ8NCD3 748 aaPredicted RBP22.03■■□□□ 1.12
HMGB3-205ENST00000455596 SORCS1Q8WY21 1168 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 MRGPRX1Q96LB2 322 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 NAA15Q9BXJ9 866 aaKnown RBP22.03■■□□□ 1.12
HMGB3-205ENST00000455596 SYNCQ9H7C4 482 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 PLCB1Q9NQ66 1216 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 GGA2Q9UJY4 613 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 CEP250Q9BV73 2442 aa22.03■■□□□ 1.12
HMGB3-205ENST00000455596 AP5Z1O43299 807 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 SYNCRIPO60506 623 aaKnown RBP22.02■■□□□ 1.12
HMGB3-205ENST00000455596 HSF2BPO75031 334 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 CYP11B1P15538 503 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 LIMK1P53667 647 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 STX1AQ16623 288 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 FUT11Q495W5 492 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 RNF43Q68DV7 783 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 KIAA1324Q6UXG2 1013 aaKnown RBP22.02■■□□□ 1.12
HMGB3-205ENST00000455596 FAM183BPQ6ZVS7 135 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 KIAA0907Q7Z7F0 614 aaPredicted RBP22.02■■□□□ 1.12
HMGB3-205ENST00000455596 DEFB106AQ8N104 65 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 PRICKLE1Q96MT3 831 aaPredicted RBP22.02■■□□□ 1.12
HMGB3-205ENST00000455596 SLC2A13Q96QE2 648 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 NUCKS1Q9H1E3 243 aaKnown RBP22.02■■□□□ 1.12
HMGB3-205ENST00000455596 SLC6A17Q9H1V8 727 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 FANCLQ9NW38 375 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.02■■□□□ 1.12
HMGB3-205ENST00000455596 STIM2Q9P246 746 aa22.02■■□□□ 1.12
HMGB3-205ENST00000455596 NYNRINQ9P2P1 1898 aaKnown RBP22.02■■□□□ 1.12
HMGB3-205ENST00000455596 DCHS1Q96JQ0 3298 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 IGHV1OR15-9A0A0B4J2B8 117 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 ERBB2P04626 1255 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 PITX1P78337 314 aaPredicted RBP22.01■■□□□ 1.11
HMGB3-205ENST00000455596 CDK17Q00537 523 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 RPL6Q02878 288 aaKnown RBP22.01■■□□□ 1.11
HMGB3-205ENST00000455596 PTPN20Q4JDL3 420 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 ZC3H12AQ5D1E8 599 aaKnown RBP22.01■■□□□ 1.11
HMGB3-205ENST00000455596 MS4A13Q5J8X5 152 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 FKBP15Q5T1M5 1219 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 CCDC183Q5T5S1 534 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 OLFML1Q6UWY5 402 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 SERPINA13PQ6UXR4 307 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 ARMCX6Q7L4S7 300 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 ADIPOR2Q86V24 386 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 MFN1Q8IWA4 741 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 ATP6V0D2Q8N8Y2 350 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 TMEM35BQ8NCS4 154 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 WFDC5Q8TCV5 224 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 PIGKQ92643 395 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 BTN2A3PQ96KV6 586 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 STK33Q9BYT3 514 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 FAM204AQ9H8W3 233 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 RXFP3Q9NSD7 469 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 SLC12A6Q9UHW9 1150 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 CYP8B1Q9UNU6 501 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 PLA2G4CQ9UP65 541 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 PI4KAP42356 2102 aa22.01■■□□□ 1.11
HMGB3-205ENST00000455596 GRAP2O75791 330 aa22■■□□□ 1.11
HMGB3-205ENST00000455596 EPHX1P07099 455 aa22■■□□□ 1.11
HMGB3-205ENST00000455596 PRKCHP24723 683 aa22■■□□□ 1.11
HMGB3-205ENST00000455596 CD70P32970 193 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms