RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 RSRC1Q96IZ7 334 aaKnown RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 GAD1Q99259 594 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 TBCBQ99426 244 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 ZNF670Q9BS34 389 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 TSEN34Q9BSV6 310 aaKnown RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 EBF2Q9HAK2 575 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 PAK6Q9NQU5 681 aaPredicted RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 SMYD2Q9NRG4 433 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 AP4E1Q9UPM8 1137 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 BCLAF3A2AJT9 711 aaKnown RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 HAUS5O94927 633 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 ETV4P43268 484 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 IRX4P78413 519 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 SLC10A2Q12908 348 aaPredicted RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 SOWAHAQ2M3V2 549 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 PKDCCQ504Y2 493 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 KCNT2Q6UVM3 1135 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 DENND5BQ6ZUT9 1274 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 PYROXD2Q8N2H3 581 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 CCDC185Q8N715 623 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 BEST2Q8NFU1 509 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 NDRG1Q92597 394 aaKnown RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 INPP5DQ92835 1189 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 PCMTD2Q9NV79 361 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 NKX1-2Q9UD57 310 aaPredicted RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 FAM237BA0A1B0GVD1 139 aa11□□□□□ -0.65
CUX1-205ENST00000425244 MDM4O15151 490 aa11□□□□□ -0.65
CUX1-205ENST00000425244 STAU1O95793 577 aaKnown RBP11□□□□□ -0.65
CUX1-205ENST00000425244 CSH1P0DML2 217 aa11□□□□□ -0.65
CUX1-205ENST00000425244 CSH2P0DML3 217 aa11□□□□□ -0.65
CUX1-205ENST00000425244 AMPD1P23109 780 aa11□□□□□ -0.65
CUX1-205ENST00000425244 LMO2P25791 158 aa11□□□□□ -0.65
CUX1-205ENST00000425244 L1CAMP32004 1257 aa11□□□□□ -0.65
CUX1-205ENST00000425244 SLC18A2Q05940 514 aa11□□□□□ -0.65
CUX1-205ENST00000425244 SOX4Q06945 474 aaPredicted RBP11□□□□□ -0.65
CUX1-205ENST00000425244 NAA25Q14CX7 972 aa11□□□□□ -0.65
CUX1-205ENST00000425244 PARP6Q2NL67 630 aa11□□□□□ -0.65
CUX1-205ENST00000425244 FAM131BQ86XD5 332 aa11□□□□□ -0.65
CUX1-205ENST00000425244 NT5DC4Q86YG4 428 aa11□□□□□ -0.65
CUX1-205ENST00000425244 DNAJC5GQ8N7S2 189 aa11□□□□□ -0.65
CUX1-205ENST00000425244 FAM149B1Q96BN6 582 aa11□□□□□ -0.65
CUX1-205ENST00000425244 KCTD15Q96SI1 283 aaPredicted RBP11□□□□□ -0.65
CUX1-205ENST00000425244 CEP41Q9BYV8 373 aa11□□□□□ -0.65
CUX1-205ENST00000425244 PLAC1Q9HBJ0 212 aa11□□□□□ -0.65
CUX1-205ENST00000425244 ARL8BQ9NVJ2 186 aa11□□□□□ -0.65
CUX1-205ENST00000425244 MARCOQ9UEW3 520 aaPredicted RBP11□□□□□ -0.65
CUX1-205ENST00000425244 I3L4J1 428 aa11□□□□□ -0.65
CUX1-205ENST00000425244 NEBLO76041 1014 aa11□□□□□ -0.65
CUX1-205ENST00000425244 POMCP01189 267 aa11□□□□□ -0.65
CUX1-205ENST00000425244 APOEP02649 317 aa11□□□□□ -0.65
CUX1-205ENST00000425244 DHRS4L1P0CG22 281 aa11□□□□□ -0.65
CUX1-205ENST00000425244 SETSIPP0DME0 302 aa11□□□□□ -0.65
CUX1-205ENST00000425244 KITP10721 976 aa11□□□□□ -0.65
CUX1-205ENST00000425244 MYL2P10916 166 aa11□□□□□ -0.65
CUX1-205ENST00000425244 IGFBP6P24592 240 aaPredicted RBP11□□□□□ -0.65
CUX1-205ENST00000425244 SNX16P57768 344 aa11□□□□□ -0.65
CUX1-205ENST00000425244 CRADDP78560 199 aa11□□□□□ -0.65
CUX1-205ENST00000425244 TMPRSS15P98073 1019 aa11□□□□□ -0.65
CUX1-205ENST00000425244 MBTPS1Q14703 1052 aa11□□□□□ -0.65
CUX1-205ENST00000425244 LGSNQ5TDP6 509 aa11□□□□□ -0.65
CUX1-205ENST00000425244 ANKRD20A3Q5VUR7 823 aa11□□□□□ -0.65
CUX1-205ENST00000425244 HEATR6Q6AI08 1181 aaKnown RBP11□□□□□ -0.65
CUX1-205ENST00000425244 SH2D5Q6ZV89 423 aa11□□□□□ -0.65
CUX1-205ENST00000425244 SLC2A14Q8TDB8 520 aa11□□□□□ -0.65
CUX1-205ENST00000425244 DIS3LQ8TF46 1054 aaKnown RBP11□□□□□ -0.65
CUX1-205ENST00000425244 DEPDC1BQ8WUY9 529 aa11□□□□□ -0.65
CUX1-205ENST00000425244 RTP4Q96DX8 246 aa11□□□□□ -0.65
CUX1-205ENST00000425244 LBHD1Q9BQE6 289 aaPredicted RBP11□□□□□ -0.65
CUX1-205ENST00000425244 PPP1R12CQ9BZL4 782 aa11□□□□□ -0.65
CUX1-205ENST00000425244 SEPT10Q9P0V9 454 aa11□□□□□ -0.65
CUX1-205ENST00000425244 PHF24Q9UPV7 400 aa11□□□□□ -0.65
CUX1-205ENST00000425244 FRMPD3Q5JV73 1810 aa11□□□□□ -0.65
CUX1-205ENST00000425244 CYB561D2O14569 222 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 ENTPD5O75356 428 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 TOP3BO95985 862 aaKnown RBP10.99□□□□□ -0.65
CUX1-205ENST00000425244 GOT1P17174 413 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 GNL1P36915 607 aaPredicted RBP10.99□□□□□ -0.65
CUX1-205ENST00000425244 CCL23P55773 120 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 PRKD1Q15139 912 aaPredicted RBP10.99□□□□□ -0.65
CUX1-205ENST00000425244 TRIM71Q2Q1W2 868 aaKnown RBP10.99□□□□□ -0.65
CUX1-205ENST00000425244 PAN2Q504Q3 1202 aaKnown RBP10.99□□□□□ -0.65
CUX1-205ENST00000425244 C9orf57Q5W0N0 161 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 SMYD5Q6GMV2 418 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 TTC7BQ86TV6 843 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 CHSY1Q86X52 802 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 UNC5BQ8IZJ1 945 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 TTC8Q8TAM2 541 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 ZNF398Q8TD17 642 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 SCLYQ96I15 445 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 CSPG4P5Q96PW8 444 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 NUDCD1Q96RS6 583 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 LGMNQ99538 433 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 FRMD8Q9BZ67 464 aaPredicted RBP10.99□□□□□ -0.65
CUX1-205ENST00000425244 SNX25Q9H3E2 840 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 ZNF395Q9H8N7 513 aaPredicted RBP10.99□□□□□ -0.65
CUX1-205ENST00000425244 PLEKHA5Q9HAU0 1116 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 SLC24A3Q9HC58 644 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 ARMCX1Q9P291 453 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 SLC17A6Q9P2U8 582 aa10.99□□□□□ -0.65
CUX1-205ENST00000425244 C1QAP02745 245 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms