RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 BIRC7Q96CA5 298 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 TMA16Q96EY4 203 aaKnown RBP8.46□□□□□ -1.06
VIM-202ENST00000421459 ORAI3Q9BRQ5 295 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 LHX5Q9H2C1 402 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 TMEM245Q9H330 911 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 EBF2Q9HAK2 575 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 PRSS16Q9NQE7 514 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 RAB20Q9NX57 234 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 SERGEFQ9UGK8 458 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 TSPAN16Q9UKR8 245 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 STRIP2Q9ULQ0 834 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.46□□□□□ -1.06
VIM-202ENST00000421459 ZDHHC9Q9Y397 364 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 CEP192Q8TEP8 1941 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 TRABD2BA6NFA1 517 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 FAM47DPA6NHR8 397 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 WNT9AO14904 365 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 TBL1XO60907 577 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 DKK1O94907 266 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 CER1O95813 267 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 TRIM21P19474 475 aaKnown RBP8.45□□□□□ -1.06
VIM-202ENST00000421459 SLC6A4P31645 630 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 SYKP43405 635 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 MXI1P50539 228 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 ADIGQ0VDE8 80 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 CAMK2BQ13554 666 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 NFIL3Q16649 462 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 MPPE1Q53F39 396 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 MBLAC2Q68D91 279 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 DHRS13Q6UX07 377 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 MMS22LQ6ZRQ5 1243 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 KIAA0907Q7Z7F0 614 aaPredicted RBP8.45□□□□□ -1.06
VIM-202ENST00000421459 GATAD2AQ86YP4 633 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 ARHGAP18Q8N392 663 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 CCDC150Q8NCX0 1101 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 FBXL13Q8NEE6 735 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 SNX21Q969T3 373 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 PLD4Q96BZ4 506 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 CDK5RAP1Q96SZ6 601 aaKnown RBP8.45□□□□□ -1.06
VIM-202ENST00000421459 ZSWIM1Q9BR11 485 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 SLC2A11Q9BYW1 496 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 UBXN6Q9BZV1 441 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 KIAA1522Q9P206 1035 aaPredicted RBP8.45□□□□□ -1.06
VIM-202ENST00000421459 STIM2Q9P246 746 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 GGA2Q9UJY4 613 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 CFAP45Q9UL16 551 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 NFE2L3Q9Y4A8 694 aa8.45□□□□□ -1.06
VIM-202ENST00000421459 MYO18AQ92614 2054 aaKnown RBP8.45□□□□□ -1.06
VIM-202ENST00000421459 PCNX2A6NKB5 2137 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 RNF225M0QZC1 329 aaPredicted RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 XPO1O14980 1071 aaKnown RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 NPC1O15118 1278 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 FLRT2O43155 660 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 TIMM44O43615 452 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 SEMA4FO95754 770 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 WNT1P04628 370 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 IGHV4-34P06331 123 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 HSP90AA1P07900 732 aaKnown RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 ZNF883P0CG24 379 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 PABPC1P11940 636 aaKnown RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 CD19P15391 556 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 CTSOP43234 321 aaPredicted RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 HARS2P49590 506 aaKnown RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 AFF3P51826 1226 aaKnown RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 ZNF132P52740 706 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 PMS1P54277 932 aaKnown RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 EIF4HQ15056 248 aaKnown RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 DCAF17Q5H9S7 520 aaPredicted RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 FSCBQ5H9T9 825 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 TCERG1LQ5VWI1 586 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 ATL3Q6DD88 541 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 NADSYN1Q6IA69 706 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 IL27RAQ6UWB1 636 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 KRBA2Q6ZNG9 492 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 CFAP52Q8N1V2 620 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 GUF1Q8N442 669 aaKnown RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 GANCQ8TET4 914 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 RNF139Q8WU17 664 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 TFAP2BQ92481 460 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 ERCC4Q92889 916 aaPredicted RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 KAT5Q92993 513 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 MYO19Q96H55 970 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 LMLNQ96KR4 655 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 SPATA32Q96LK8 384 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 SLC6A18Q96N87 628 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 IPO9Q96P70 1041 aaKnown RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 BTBD1Q9H0C5 482 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 LRRC4Q9HBW1 653 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 GDPD2Q9HCC8 539 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 INTS6Q9UL03 887 aaKnown RBP8.44□□□□□ -1.06
VIM-202ENST00000421459 PLA2G4CQ9UP65 541 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 ATRXP46100 2492 aa8.44□□□□□ -1.06
VIM-202ENST00000421459 FAM208BQ5VWN6 2430 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 PLXNB3Q9ULL4 1909 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 TTC34A8MYJ7 566 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 O00370 1275 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 PLK4O00444 970 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 SIN3BO75182 1162 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 DNTTP04053 509 aa8.43□□□□□ -1.06
VIM-202ENST00000421459 PRB1P04280 392 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms