RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 TCRBV7S2A1N4TA0A589 114 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 F5H5T6 163 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 TCEA3O75764 348 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 GALTP07902 379 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 AMPD1P23109 780 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 KLRC2P26717 231 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 RPL22P35268 128 aaKnown RBP8.65□□□□□ -1.02
USP54-203ENST00000418501 ATP5C1P36542 298 aaKnown RBP8.65□□□□□ -1.02
USP54-203ENST00000418501 ADCY1Q08828 1119 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 PAFAH1B3Q15102 231 aaKnown RBP8.65□□□□□ -1.02
USP54-203ENST00000418501 TRIP4Q15650 581 aaPredicted RBP8.65□□□□□ -1.02
USP54-203ENST00000418501 BTN2A3PQ96KV6 586 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 HERC2P3Q9BVR0 1158 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 SP110Q9HB58 689 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 INTS9Q9NV88 658 aaKnown RBP8.65□□□□□ -1.02
USP54-203ENST00000418501 WBP1LQ9NX94 342 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 EBAG9O00559 213 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 IRAK2O43187 625 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 LRG1P02750 347 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 HAPLN1P10915 354 aaPredicted RBP8.65□□□□□ -1.02
USP54-203ENST00000418501 ZC3H12AQ5D1E8 599 aaKnown RBP8.65□□□□□ -1.02
USP54-203ENST00000418501 RTL10Q7L3V2 364 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 CPLX4Q7Z7G2 160 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 DNAAF3Q8N9W5 541 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 EDEM1Q92611 657 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 LRRC40Q9H9A6 602 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 MARCH2Q9P0N8 246 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 MID2Q9UJV3 735 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 ZNF510Q9Y2H8 683 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 NR2E1Q9Y466 385 aa8.65□□□□□ -1.02
USP54-203ENST00000418501 YJEFN3A6XGL0 299 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 E7ENQ6 273 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 TIMP1P01033 207 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 FGBP02675 491 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 SOD2P04179 222 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 NPY2RP49146 381 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 GEMIN4P57678 1058 aaKnown RBP8.65□□□□□ -1.03
USP54-203ENST00000418501 HECTD3Q5T447 861 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 HHATQ5VTY9 493 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 MSANTD2Q6P1R3 559 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 CTAGE3PQ8IX95 158 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 MTBPQ96DY7 904 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 CRISPLD2Q9H0B8 497 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 USP3Q9Y6I4 520 aa8.65□□□□□ -1.03
USP54-203ENST00000418501 SDR42E2A6NKP2 422 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 NBNO60934 754 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 DDHD2O94830 711 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 MT-ND3P03897 115 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 APRTP07741 180 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 GJA8P48165 433 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 SKOR1P84550 965 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 TTC39BQ5VTQ0 682 aaPredicted RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 MFSD5Q6N075 450 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 CHSY1Q86X52 802 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 ZNF280BQ86YH2 543 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 PCDH19Q8TAB3 1148 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 MRPS31Q92665 395 aaKnown RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 ARMC5Q96C12 935 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 SGSM3Q96HU1 749 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 C1orf74Q96LT6 269 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 UBE2OQ9C0C9 1292 aaKnown RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 ARHGEF4Q9NR80 690 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 ETNK2Q9NVF9 386 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 ZC3H7BQ9UGR2 993 aaKnown RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 SLC12A8A0AV02 714 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 MEIS3P2A8K0S8 358 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 BHMG1C9JSJ3 638 aaPredicted RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 PECAM1P16284 738 aaPredicted RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 RENBPP51606 427 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 NRG1Q02297 640 aaPredicted RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 ZNF844Q08AG5 666 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 KYNUQ16719 465 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 ARHGAP15Q53QZ3 475 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 RNASEH2BQ5TBB1 312 aaKnown RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 ZDHHC24Q6UX98 284 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 TSEN2Q8NCE0 465 aaKnown RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 FBXO22Q8NEZ5 403 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 PPP2R3CQ969Q6 453 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 NT5C3BQ969T7 300 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 PLD4Q96BZ4 506 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 RTP4Q96DX8 246 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 MTRRQ9UBK8 725 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 POC1B-GALNT4F8VUJ3 575 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 MOCS2O96007 188 aaPredicted RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 ADH1AP07327 375 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 RHOQP17081 205 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 GOT1P17174 413 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 ERCC2P18074 760 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 CES1P23141 567 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 RBL1P28749 1068 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 MAGOHP61326 146 aaKnown RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 EFEMP1Q12805 493 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 TAF5Q15542 800 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 KCTD16Q68DU8 428 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 ARHGEF2Q92974 986 aaKnown RBP8.64□□□□□ -1.03
USP54-203ENST00000418501 IGSF21Q96ID5 467 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 KCNK16Q96T55 309 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 ZYG11BQ9C0D3 744 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 CYP4F11Q9HBI6 524 aa8.64□□□□□ -1.03
USP54-203ENST00000418501 NINJ2Q9NZG7 142 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms